Chaetura pelagica (chimney swift): 104397007
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Entry
104397007 CDS
T08631
Symbol
THOC1
Name
(RefSeq) THO complex subunit 1
KO
K12878
THO complex subunit 1
Organism
cpea
Chaetura pelagica (chimney swift)
Pathway
cpea03013
Nucleocytoplasmic transport
cpea03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cpea00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104397007 (THOC1)
09122 Translation
03013 Nucleocytoplasmic transport
104397007 (THOC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpea03019
]
104397007 (THOC1)
03041 Spliceosome [BR:
cpea03041
]
104397007 (THOC1)
Messenger RNA biogenesis [BR:
cpea03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
104397007 (THOC1)
Spliceosome [BR:
cpea03041
]
Complex C
Other components
EJC/TREX
104397007 (THOC1)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
104397007 (THOC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
efThoc1
Death
bDLD3
Motif
Other DBs
NCBI-GeneID:
104397007
NCBI-ProteinID:
XP_010005222
LinkDB
All DBs
Position
Unknown
AA seq
673 aa
AA seq
DB search
MAVTLDPLSLCCLLADLEKQLTVVKNSTREALNHKSIKPLLNAFNQIPGSENEKKCTLDQ
AFRVIVEEEIINKAPCENLLAIISLAINGVTEGICTASTPFVLLGDVLDCLPLDQCDRIF
TFVEKNVATWKSNTFYSAGKNYLLRMCNDLLRRLSKSQNTVFCGRIQLFLARLFPLSEKS
GLNLQSQFNLENVTVFNTNEHESTLGQKHSEEREEGMDVEEGEMGDDEAPTSCSIPIDYN
LYRKFWSLQDYFRNPVQCYEKVSWKTFLKYSEEVLAVFKSYKLDDTQASRKKLEELKTGG
EHVYFAKFLTSEKLMDLQLSDSNFRRHILLQYLILFQYLKGQVKFKSSNYVLTDEQSLWI
EDTTKAVYQLLSENPPDGERFSKMVEHILNTEENWNSWKNEGCPSFVKERSQPEFQPGPP
DSKPMRPARKRPAPEDFLGKGPNKKILMGNEELTRLWNLCPDNMEACKSESREYMPTLEE
FFEEAIEQADPENMVENKYKAVNNSNYGWRALRLLARRSPHFFQPTNQQFKSLPEYLENM
VIKLAKELPPPSEEIKTGEDEDEEDNDALLKENNESPDVQRDKAMTGEQIESFANRLGEQ
WKALAPYLEMKDSDIRQIELDSEDLKMRAKQLLVAWQDQEGAHATPENLITALNKAGLSD
LAESLTNDTETSN
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atggcagtaacacttgatcctctgagcctgtgctgtcttctggctgacctagagaaacag
ctcactgtggtgaagaattccaccagagaggctctgaatcacaaaagcatcaagccgttg
ttgaatgcatttaaccagattcctgggagtgaaaatgagaagaagtgtactttggatcaa
gcttttagagttattgtagaagaagaaataataaacaaagcaccgtgtgaaaatctcttg
gcaattatttctcttgctattaatggcgttaccgaaggtatctgcactgcatcaacccct
tttgtgctcctgggggatgttctggattgcctgcctttggatcagtgtgacagaattttc
acttttgtggagaaaaatgttgctacatggaaatcaaataccttttattctgcagggaaa
aattacttgctacgaatgtgcaatgaccttctacgaagattatcaaagtcacaaaacact
gtcttctgtggaagaattcaactgttcttggctaggttatttccactttcagaaaaatca
ggactcaacttgcagagtcagtttaacctggaaaatgtcactgttttcaataccaatgaa
catgagagcactctaggacaaaagcactctgaggagagagaagaaggaatggatgtagaa
gaaggtgaaatgggagatgatgaagcaccaacaagctgttccattccaatagattataac
ctgtatagaaaattctggtcacttcaagattattttagaaatcctgtgcagtgctatgag
aaggtctcatggaagacttttcttaagtactcagaagaagttttggcagttttcaaaagt
tacaaattggacgatactcaagcatcccgaaaaaagctggaagaactaaaaacaggagga
gaacatgtatattttgcaaagttcctaactagtgaaaagctgatggatttacagctgagt
gacagtaactttcgccgtcacatcttgttgcagtacctaatactatttcagtatctaaag
ggacaggtcaaatttaaaagttcaaactatgttctaacagatgaacagtctctttggatt
gaagatactacaaaagcagtttaccagcttctttcagaaaatcctccagatggggaaaga
ttctcaaaaatggtagagcatatattaaatactgaagaaaactggaactcatggaaaaat
gagggctgcccaagctttgtgaaagaaagatctcagccagagtttcagcctggacctcct
gattctaagccaatgaggcctgcaagaaagaggccagctccagaggactttttaggaaaa
gggccaaacaaaaaaatccttatggggaatgaggaactgacccgcctttggaacttatgt
cctgataacatggaagcttgtaaatctgagagcagggaatacatgccaacgctggaggag
ttttttgaagaagctattgaacaagcagatcctgaaaacatggttgaaaataagtataag
gctgtgaacaattctaactatggctggagagcactgagactgctagcacgcagaagcccc
cacttcttccagccaacaaatcagcaattcaagagtttacctgaatacctagaaaacatg
gtgatcaaattagccaaggagctgcctcctccttctgaagaaataaaaacaggcgaagat
gaagatgaggaagataatgatgctttactaaaggaaaacaatgaaagcccagatgtgcaa
cgggacaaagccatgacgggtgaacaaattgagtcatttgctaacaggcttggggagcag
tggaaggccttggccccctacttggaaatgaaggattctgatatacggcagatcgagttg
gacagtgaggacctgaagatgagagccaagcagctgctggttgcctggcaggatcaggag
ggcgctcatgcaacccccgagaacctgatcactgcactgaacaaagctgggctaagtgac
cttgcggaaagcctgaccaacgacactgaaaccagcaactaa
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