KEGG   Cucurbita pepo subsp. pepo (vegetable marrow): 111777258
Entry
111777258         CDS       T05351                                 
Name
(RefSeq) DNA ligase 1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
cpep  Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03030  DNA replication
cpep03410  Base excision repair
cpep03420  Nucleotide excision repair
cpep03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:cpep00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    111777258
   03410 Base excision repair
    111777258
   03420 Nucleotide excision repair
    111777258
   03430 Mismatch repair
    111777258
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cpep03032]
    111777258
   03400 DNA repair and recombination proteins [BR:cpep03400]
    111777258
Enzymes [BR:cpep01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     111777258
    6.5.1.6  DNA ligase (ATP or NAD+)
     111777258
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     111777258
DNA replication proteins [BR:cpep03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    111777258
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     111777258
DNA repair and recombination proteins [BR:cpep03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     111777258
   NER (nucleotide excision repair)
    Other NER factors
     111777258
   MMR (mismatch excision repair)
    Other MMR factors
     111777258
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-GeneID: 111777258
NCBI-ProteinID: XP_023512549
LinkDB
Position
LG16:6079307..6085998
AA seq 804 aa
MLPLRSCYCLRPITLVHPQFKKLIFSNKPPSVKPIFKNFVSAMSSRPSAFDALMSGARAA
AKKKPVNSSPKKRKALDSLDPPPKSNSSLALESTPPVESQCGSSTSTLDNHGYPNLVKSE
EAVDLGETKLRQDDGGNFGGKIGPVANKKCASSVQERTAKLKSSIPELKKKAKDFNSKTF
ACWNEGERVPFLFLCLGFDMISEESSRITITDIVCNMLRTVMDTTPDDLVATVYLLANKI
APAHEGLELGIGDASIIKALSEAFGRTEAQVKKQYKELGDLGLVAKASRSSQSMMRKPDA
LTITKVFDSFRLIAKESGKDSQEKKKNHIKSLLVAATDCEPLYLIRLLQTKLRIGLAEQT
LLAALGQAAVYAEKHSTPPANVQSPLEEGAKIVKQVYSVLPVYDKLVPALLNGGVWNLSK
TCNFTPGIPIGPMLAKPTKGVSEILNKFQGLEFTCEYKYDGERAQIHYMEDGSVEIYSRN
AERNTGKFPDVVLTVSRIKKPSVRSFILDCELVAYDRGKQKILPFQILSTRARKNVAVSD
IKVEVCVFAFDLLYLDGQPLIQKELSVRREHLYDSFIEEAGYFQFATAITTSDLEEIQKF
LDASVDQSCEGLIIKTLNRDATYEPSKRSLNWLKLKKDYIDNIGDSLDLVPIAAFHGRGK
RTGVYGAFLLACYDNDNEEFQSICKIGTGFSEAMLEERSASLRSKVIPEPKSYYRYGDTI
NPDVWFEPTEVWEVKAADLTISPVHRAGVGIVDSNKGISLRFPRLVRVRKDKTPEEATLS
EQVADMYNAQKLNHQNNQDDNDED
NT seq 2415 nt   +upstreamnt  +downstreamnt
atgcttcctctgcgttcatgctactgtttacgccccattacattggttcatcctcaattc
aagaaactcatcttctccaacaaacctccctctgtcaaacccatttttaagaattttgtt
tcagcaatgtcttctcgtccttctgctttcgatgctctcatgtccggtgctcgggccgct
gccaagaagaagcctgtaaattcttctcccaagaagcgtaaagccctagattctttagac
cctcctccgaaatctaactcttccctggctttggagtcaacgccgcctgttgaatcgcag
tgcggtagttcaacctcaactttggataatcatggatatcctaatctggttaagtccgag
gaagctgtagatttgggggaaaccaagttgcgtcaggatgatggtgggaattttggaggc
aagattgggccggttgcgaataagaagtgcgcgtctagtgttcaagaaagaactgcgaaa
ttgaagagctctatcccagagttgaaaaagaaggccaaggatttcaactcgaaaacattt
gcatgttggaatgagggcgaacgggttccatttttgtttctgtgtttggggtttgatatg
atttcggaggagtctagtaggattactatcaccgatatcgtctgcaacatgttgaggacc
gtcatggatactacacccgacgacttggtagccactgtgtatcttttggcgaataagatt
gctcccgcgcacgaagggctcgagttgggtattggggatgcttctattatcaaagctctt
tctgaggcatttgggaggacagaggcacaggttaaaaaacagtacaaggaattgggagat
ttaggtcttgttgccaaagcgagccgttcgtcacaatccatgatgcgaaagcctgatgct
ttaactattaccaaagtatttgactcatttcggctgatcgctaaggaatctggcaaggat
agtcaggagaagaaaaagaaccatatcaagtcactgcttgttgctgccactgactgcgaa
cctttgtatctgattagattgctgcagacaaaattgcgaattggacttgctgagcagact
cttttagctgcattagggcaagcagctgtatatgctgaaaaacattcaacacccccagcg
aacgttcaatctcctctagaagagggtgctaagattgtaaagcaggtgtattctgtgctc
cctgtttatgataaacttgtccctgcgcttcttaatggtggtgtgtggaacctttcaaaa
acatgcaactttacaccgggaattccaattggacctatgttggcaaaaccaacaaaggga
gtctccgagatcttaaataaattccagggtttggaatttacttgtgaatacaaatatgat
ggggaacgtgcccagattcattacatggaagatggttcagttgagatctacagtcgaaat
gctgaacggaacactggaaagttccctgatgttgttctcacggtatcaaggataaagaaa
ccatctgtaagatcgtttattttggattgtgaacttgttgcttatgatcgtggaaaacag
aagattttgccttttcagattctgagtacacgagctcgcaagaacgtggccgtgagcgat
attaaggttgaagtgtgtgtatttgcttttgatttactctatcttgatggtcaaccactt
attcagaaagaacttagtgttcgtcgagagcatctctatgattcatttattgaagaagct
ggatattttcaatttgccacagcaataacaacaagcgatcttgaggaaatacaaaaattc
cttgatgcatctgttgatcaaagttgtgagggtttaatcatcaaaacattgaaccgggat
gctacttacgagccttccaagaggtcacttaactggctaaaactgaagaaggattacata
gacaacataggggattcacttgatctggtaccaattgctgctttccatggccgtgggaag
cgtacaggtgtctatggcgcatttctccttgcctgttatgacaatgacaatgaagaattt
caaagtatttgtaagattggaactggtttttctgaagcaatgcttgaggaacgttctgct
agtctccgttctaaagtcattccagaaccaaagtcatattatcggtatggagatacaatc
aatccagatgtttggtttgaacctactgaggtttgggaggttaaagcggcagacttgact
atcagcccagttcatcgtgcaggagtcggcatcgtggattccaacaagggaatttctctt
cggtttccacgtcttgttcgtgtaaggaaagacaaaactccagaggaggccacattgtct
gagcaggttgccgacatgtataatgctcagaaactcaaccaccaaaacaatcaagatgac
aatgatgaagactga

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