Cucurbita pepo subsp. pepo (vegetable marrow): 111777733
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Entry
111777733 CDS
T05351
Name
(RefSeq) histone deacetylase 9-like isoform X1
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03082
ATP-dependent chromatin remodeling
cpep03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
111777733
03083 Polycomb repressive complex
111777733
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cpep03036
]
111777733
Enzymes [BR:
cpep01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
111777733
Chromosome and associated proteins [BR:
cpep03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
111777733
HDAC complexes
Sin3A-HDAC complex
111777733
BRAF-HDAC complex
111777733
REST complex
111777733
SHIP complex
111777733
MiDAC complex
111777733
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
111777733
Heterochromatin formation proteins
Other heterochromatin formation proteins
111777733
Chromatin remodeling factors
NuRD complex
111777733
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
111777733
NCBI-ProteinID:
XP_023513215
LinkDB
All DBs
Position
LG16:7775633..7783169
Genome browser
AA seq
430 aa
AA seq
DB search
MRSKDRISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYELHKKMEIYRPHKAYPVEL
AQFHSADYVEFLHRITPDTQHLFANELSKYNLGEDCPVFENLFEFCQIYAGGTIDAARRL
NHQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHSRVLYIDIDVHHGDGVE
EAFYFTDRVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAINVPLKDGIDDGSFTRLFRT
IISKVVEMYRPGVIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGY
TKENVARCWTVETGVLLDTELPNEIPENEYIKYFSPDHLLRIPNGHMENLNTKSYISTIK
TQVLENLRFIQYAPGVQMQEVPPDFYIPDIDEDEQNPDERMNRHTQDKQIQRDDEHYEGD
NDNDHDMDDA
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atgcgctccaaggataggatttcatacttttatgatggggacgttggaagtgtttacttt
ggtccaaatcatccaatgaaaccacatcggctctgtatgactcaccatctcgttctctcg
tatgagcttcataagaagatggaaatttatcgtccccacaaagcatatcctgtggagctt
gctcagttccattcagctgattatgtggaatttctgcaccgaataactccagatactcaa
cacttgtttgccaatgaactgtctaaatataatcttggagaggattgccctgtctttgag
aacttgtttgaattctgccaaatatatgctggtggaacaatagatgctgcacgcagatta
aatcatcaactatgtgacattgcaataaattgggcaggtggcttacatcatgctaaaaag
tgcgaggcttctgggttttgctatatcaatgacttggttttggggatactagaacttctg
aagtatcattctcgtgttttatatattgacatagatgtacatcatggtgatggggtagag
gaagccttttatttcactgacagggtgatgaccgttagttttcacaagtttggggacttg
ttttttcctggaactggtgacgttaaggaaataggagaaagagaaggcaagttttatgcc
attaatgttccactgaaggatggaatagatgatggtagcttcaccagactttttaggact
attatctccaaggttgttgaaatgtatcgaccaggtgtcattgttctccagtgtggagcc
gattcattggctggtgatcgcttaggctgcttcaatctctctattgatggtcatgctgaa
tgtgttagatttgtcaagaaattcaatttgccattattggttactggaggtggaggttat
accaaagagaatgtagctagatgttggactgttgaaacgggtgttcttctggatacagag
ctgcctaatgaaatcccagagaacgagtatatcaaatatttttctccagatcatttgcta
agaattccaaatgggcatatggaaaatttaaatacgaaatcttacattagcacgatcaaa
acacaagtcttggaaaatctccgtttcatccaatatgctccaggtgtacaaatgcaagag
gttcctcccgacttctatattcctgacattgacgaagatgagcagaatcctgatgagcgc
atgaaccggcacacccaagacaagcaaatccagcgtgatgatgaacattatgaaggcgat
aacgataacgatcacgatatggatgatgcgtga
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