KEGG   Cucurbita pepo subsp. pepo (vegetable marrow): 111777733
Entry
111777733         CDS       T05351                                 
Name
(RefSeq) histone deacetylase 9-like isoform X1
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
cpep  Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03082  ATP-dependent chromatin remodeling
cpep03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:cpep00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    111777733
   03083 Polycomb repressive complex
    111777733
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:cpep03036]
    111777733
Enzymes [BR:cpep01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     111777733
Chromosome and associated proteins [BR:cpep03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     111777733
   HDAC complexes
    Sin3A-HDAC complex
     111777733
    BRAF-HDAC complex
     111777733
    REST complex
     111777733
    SHIP complex
     111777733
    MiDAC complex
     111777733
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     111777733
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    111777733
  Chromatin remodeling factors
   NuRD complex
    111777733
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 111777733
NCBI-ProteinID: XP_023513215
LinkDB
Position
LG16:7775633..7783169
AA seq 430 aa
MRSKDRISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYELHKKMEIYRPHKAYPVEL
AQFHSADYVEFLHRITPDTQHLFANELSKYNLGEDCPVFENLFEFCQIYAGGTIDAARRL
NHQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHSRVLYIDIDVHHGDGVE
EAFYFTDRVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAINVPLKDGIDDGSFTRLFRT
IISKVVEMYRPGVIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGY
TKENVARCWTVETGVLLDTELPNEIPENEYIKYFSPDHLLRIPNGHMENLNTKSYISTIK
TQVLENLRFIQYAPGVQMQEVPPDFYIPDIDEDEQNPDERMNRHTQDKQIQRDDEHYEGD
NDNDHDMDDA
NT seq 1293 nt   +upstreamnt  +downstreamnt
atgcgctccaaggataggatttcatacttttatgatggggacgttggaagtgtttacttt
ggtccaaatcatccaatgaaaccacatcggctctgtatgactcaccatctcgttctctcg
tatgagcttcataagaagatggaaatttatcgtccccacaaagcatatcctgtggagctt
gctcagttccattcagctgattatgtggaatttctgcaccgaataactccagatactcaa
cacttgtttgccaatgaactgtctaaatataatcttggagaggattgccctgtctttgag
aacttgtttgaattctgccaaatatatgctggtggaacaatagatgctgcacgcagatta
aatcatcaactatgtgacattgcaataaattgggcaggtggcttacatcatgctaaaaag
tgcgaggcttctgggttttgctatatcaatgacttggttttggggatactagaacttctg
aagtatcattctcgtgttttatatattgacatagatgtacatcatggtgatggggtagag
gaagccttttatttcactgacagggtgatgaccgttagttttcacaagtttggggacttg
ttttttcctggaactggtgacgttaaggaaataggagaaagagaaggcaagttttatgcc
attaatgttccactgaaggatggaatagatgatggtagcttcaccagactttttaggact
attatctccaaggttgttgaaatgtatcgaccaggtgtcattgttctccagtgtggagcc
gattcattggctggtgatcgcttaggctgcttcaatctctctattgatggtcatgctgaa
tgtgttagatttgtcaagaaattcaatttgccattattggttactggaggtggaggttat
accaaagagaatgtagctagatgttggactgttgaaacgggtgttcttctggatacagag
ctgcctaatgaaatcccagagaacgagtatatcaaatatttttctccagatcatttgcta
agaattccaaatgggcatatggaaaatttaaatacgaaatcttacattagcacgatcaaa
acacaagtcttggaaaatctccgtttcatccaatatgctccaggtgtacaaatgcaagag
gttcctcccgacttctatattcctgacattgacgaagatgagcagaatcctgatgagcgc
atgaaccggcacacccaagacaagcaaatccagcgtgatgatgaacattatgaaggcgat
aacgataacgatcacgatatggatgatgcgtga

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