Cucurbita pepo subsp. pepo (vegetable marrow): 111779187
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Entry
111779187 CDS
T05351
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 42
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111779187
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cpep03041
]
111779187
Enzymes [BR:
cpep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
111779187
Spliceosome [BR:
cpep03041
]
Complex A
U2 snRNP components
U2 related factors
111779187
Complex B
111779187
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
111779187
NCBI-ProteinID:
XP_023515047
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All DBs
Position
LG17:1522559..1527500
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AA seq
1177 aa
AA seq
DB search
MEEGKSKSRRDDLENPKKSHRDRDRERDKERNGDRGRDKEKRDRESRRSEREKSVDSEEQ
QYEREKEKLRRDKDKTRSRDDERDRARVRRKDRDKERDKDKEDRGRERTRDKEKERDKEK
ERDKEKERDKEKERDKEKERDKEKDREKEKRERAREKEREKRERIKEDREKDRDREREMR
EREREREKEREKDRRKRREVSDYSDDDSTDHGRKRRRRDDDDHRAHESNSRINKQRDHSE
ESPREKSEEDATDKNETKPTREEELENEQRRLDEEMEKRRRRVQEWQKSRRLKEEADGDK
QGEPNADEPKSGKTWTLEGESDDEYENARPTEADMDVDENSKPLVEGEQVADDFNNGNEA
AGPPPQDSSNGDAGDEEIDPLDAFMNSMVLPEVEKLNKIEAPTINDNKFAELKNRDKSSD
QSGGKPQRRTSNKSMGRIIPGEDSDTDYGDLENDADTVEDEDDDEFMKRVKKTKAEKLSI
VDHSKMDYQPFRKNFYIEVKEISRMTSEEVAAYRKQLELKIHGKDVPKPVKTWHQTGLTS
KILEMIKKLNYEKPMPIQAQALPIVMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVV
PGDGPIGLIMAPTRELVQQIHSDIKKFSKVLGLRCVPVYGGSGVAQQISELKRGTEIVVC
TPGRMIDILCTSAGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSA
TFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPENERFLRLLELLGEWYEKGK
ILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSIAAR
GLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFIAEEDSRYAPDLVKALELS
EQVVPNDLRALADSFMAKVNQGLEQAHGTGYGGSGFKFNEEEDEVRRAAKKAQAKEYGFE
EDKSDSEDEDDGVRKAGGDISQQAALAQIAAIAAATKVSAASITTPSSAAQLLPNGGLPV
SLPGVLGLAIPGTTAVIPGATLPAVANDGAAARAALAAAMNLQHNLAKIQASAIPEHYEA
ELEINDFPQNARWKVTHKETLGPISEWTGAAITTRGQFFPPGKIAGPGERKLYLFIEGPT
EQSVKRAKAELKRVLEDITNQTLSLPGGSQPGRYSVV
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atggaggaggggaaaagtaaatctaggagagacgatttggagaacccaaagaagagtcat
cgggaccgcgatagggaaagggataaagagagaaacggtgatagaggcagagacaaggag
aagagagatcgtgagagtcgacgttctgagagggaaaagagtgtcgattctgaagagcag
cagtatgagagggagaaggaaaaacttagaagggacaaggataaaacacggagtcgggat
gacgaaagagatagagctagggttaggaggaaggatagagataaggaaagggacaaggac
aaagaagatagggggagggagagaacgagggacaaggagaaggagagggacaaggagaag
gagagggacaaggagaaggagagagacaaggagaaggagagagacaaggagaaagagaga
gacaaggagaaggatagagaaaaggagaagagggaaagggcaagggaaaaagagagagag
aagagagaacgcatcaaagaagatcgtgagaaggacagagacagagagagggagatgaga
gaacgtgagagagagagggaaaaggaaagagagaaggatagaaggaagcgacgggaagtt
agcgattatagtgatgatgactctactgaccatggtaggaagcgacgtaggagagacgat
gacgaccatagagctcacgaaagcaatagcaggataaataagcagagagatcacagtgaa
gagagtccacgagagaagagtgaagaagatgcaactgataagaatgaaacaaaaccaact
cgtgaagaggagctggaaaatgaacaaaggaggttggatgaagaaatggaaaaacgaagg
cgaagagttcaggagtggcaaaagtcacgaagattgaaggaagaagctgatggagataag
cagggtgaaccgaatgctgatgaaccgaaatctggcaagacatggacccttgaaggtgag
tctgatgatgagtatgagaatgcgagacccaccgaggcagatatggatgtggatgaaaat
tctaagccgcttgtagaaggtgagcaggttgcagatgacttcaacaatggcaacgaagca
gctggacctccaccgcaagatagcagtaatggtgatgcaggcgatgaggaaattgatcct
ctggatgctttcatgaactccatggtattgcctgaagtggagaagctaaacaaaatcgag
gcccccacaattaatgacaataaatttgcagagttgaagaacagagacaaatcaagtgat
caaagtggtggtaaaccccaaagaagaacttcaaataaatcaatgggtagaataattcct
ggtgaagattctgacacagactatggagatcttgagaatgatgcagatactgtagaagat
gaagatgatgatgagttcatgaaaagggtcaagaagacaaaggctgagaagctctctatt
gtggaccattcaaagatggattatcaacctttccgaaaaaacttctatattgaagtgaag
gagatatcgaggatgacttctgaggaagttgctgcttatcggaagcaactggaattgaag
atacacggaaaggatgttccgaagcctgttaaaacctggcatcaaactggacttacgagt
aaaattttagaaatgattaaaaaacttaactacgagaagccaatgccgatacaagctcag
gcattgccaatagtcatgagtggtcgagattgcataggtattgccaaaactggatctgga
aaaacacttgcatttgttcttccaatgctgaggcatatcaaggatcaaccacctgttgta
cccggtgatggtcctatcgggcttatcatggctcctaccagagagttggtccagcagatc
catagtgatataaagaaattttcaaaggttctgggtctaaggtgtgtgcctgtatatggc
ggttctggcgttgcccaacaaattagtgagcttaagcgtggcactgaaatagtagtttgt
actcctggaaggatgattgatatactctgcactagtgcagggaaaataacaaatctgcgt
agagttacatatttggttatggatgaagctgataggatgtttgacatgggttttgaacct
cagattactcgaattgttcaaaacattcgaccagaccgtcaaactgtactattttctgct
acttttcctcgtcaggttgaaattttggcccgcaaagtgttgaacaagcctgttgaaata
caggttggtgggaggagtgttgtgaataaggacatcacacagctggttgaagtgaggccc
gaaaatgagaggttcttgagactgttagagctattgggagaatggtatgagaagggcaag
attctaatttttgtccattcacaggaaaaatgtgatgccctttttagggatctccttaag
catggttacccttgcctctcactccatggagccaaggatcagactgatcgtgagtctacc
atatcggatttcaaaagcaatgtgtgcaacttgttaattgcaactagtattgctgccagg
ggtttagatgtcaaggagctggagctagtgatcaattttgatgttccaaaccactatgaa
gattatgttcatcgtgttggacgcacaggtcgagctggtcgtaaagggtgcgctatcaca
tttattgccgaggaagattcaagatatgcaccagatcttgtgaaagcattggaactctcc
gagcaagttgttcctaatgatctgagagcacttgctgatagtttcatggcaaaggttaat
cagggactggagcaggcccatggaactggatatggtggcagtggattcaaatttaatgag
gaagaagatgaagtgaggagggcagcaaagaaagcgcaagctaaagaatatggttttgag
gaggacaaatcagattcagaagacgaagatgatggtgtccggaaggcaggtggcgatatc
tcacagcaggcagctttggcccaaatagctgctatagcagctgccactaaagtcagtgca
gcttccatcacaactcccagctctgctgctcagctacttccaaatggcggattacctgtt
tctctgcccggtgttcttgggcttgcaattccaggaacaacagcagttattcctggtgca
acattgcctgcagttgctaatgatggggccgctgcaagggcagcattagcagctgcaatg
aacttgcagcacaacctggccaagattcaagctagtgcaatacctgaacactatgaagca
gaattggaaattaacgattttccacagaatgctcgatggaaggtaacccataaggagact
ttgggcccaatttcagagtggactggagctgctattactactagggggcagttcttccca
cctggcaagattgctggacctggagagcgcaagctatacttgttcattgaaggtccaact
gaacaatctgttaagagagctaaagctgagttaaaacgcgttcttgaggatattacaaac
caaacattgtcacttcccggtggatcacaaccaggcagatactcagttgtttaa
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integrated database retrieval system
