Cucurbita pepo subsp. pepo (vegetable marrow): 111789279
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Entry
111789279 CDS
T05351
Name
(RefSeq) general transcription factor IIH subunit 2
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03022
Basal transcription factors
cpep03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
111789279
09124 Replication and repair
03420 Nucleotide excision repair
111789279
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpep03021
]
111789279
03400 DNA repair and recombination proteins [BR:
cpep03400
]
111789279
Transcription machinery [BR:
cpep03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
111789279
DNA repair and recombination proteins [BR:
cpep03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
111789279
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
IBR
Tfb4
Motif
Other DBs
NCBI-GeneID:
111789279
NCBI-ProteinID:
XP_023525764
LinkDB
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Position
LG02:11522901..11526092
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AA seq
424 aa
AA seq
DB search
MNNGENRRLNGEAEEEDDDDDANGGMAAWERTYADDRSWEALQEDESGLLRPIDNKAIFH
AQYRRRLRSLSSLATTARIQKGLIRYLYVVIDFSRAAAEMDFRPSRMAVVAKHVEAFVRE
FFDQNPLSQIGLVTIKDGVAHSLTDLGGSPESHVKALMGKLECSGEASLQNGLDLVCGYL
NQIPSYGHREVLILYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAELFICRHLCQETG
GSYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAGESSIAICSCHKEAKVG
GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKLFHDPRHQL
PKVCFGCQENFTNPGTGNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKSA
TSDD
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
atgaacaatggcgaaaatcggcgattaaatggtgaggccgaagaagaagacgatgatgac
gatgccaatggcggaatggcggcctgggaaaggacttatgccgatgataggtcgtgggaa
gccctacaagaggacgagtctgggcttcttcggccgattgacaataaggccattttccat
gcccaatatcgcagacgtcttcgttcactttcttccttagcaaccactgctcgaattcaa
aagggtcttattcgctatctctatgtcgtcattgatttctccagggcagcagcggaaatg
gattttcgaccgagtcgaatggctgtggttgcaaaacatgtggaagcttttgtcagggaa
ttctttgaccaaaatcctctcagtcagattggtttggtgactataaaggatggagttgct
catagcttaacagatcttggtgggagtcctgagtcccatgttaaagcattaatggggaaa
ctggaatgctcaggtgaagcatccttgcagaatggtctggatcttgtttgtggctatcta
aatcaaataccatcatatgggcatagagaagttttaatcttatactctgctctcaattcc
tgtgatcctggagatataatggagacagttcagaaatgcaaaacatctaaaataaggtgt
tcagtaattggtcttactgctgaactttttatatgcagacatctctgtcaggaaaccggt
ggctcgtactcggtcgcattggatgagtcccatttcaaagagttgctattagagcacgca
cctccacccccagcaatagcagactctgcaatgcctaatttgatcaagatggggtttcca
caaagagcaggggagagttctattgcgatttgttcgtgtcacaaggaagctaaagttgga
gggggctatacttgccctcgatgcaaagctcgagtttgcgagctgccaactgagtgtcga
atttgtggattgacacttatttcttcacctcatttggctaggtcgtaccatcatctcttt
ccgattataccatttgatgaagtttctgataaactatttcatgatccacgacatcaacta
ccgaaagtttgctttggctgccaagaaaacttcacaaaccctggtacaggtaacagccca
ggcatccgagtttcttgcccaaagtgcaaacaacacttctgtcttgattgtgatatttat
attcacgagagcttgcacaattgccctggctgtgagagtttcagacgtcccaaatcagcg
acttccgatgattga
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