Cucurbita pepo subsp. pepo (vegetable marrow): 111799079
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Entry
111799079 CDS
T05351
Name
(RefSeq) probable CCR4-associated factor 1 homolog 7
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111799079
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpep03019
]
111799079
Messenger RNA biogenesis [BR:
cpep03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
111799079
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
111799079
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
111799079
NCBI-ProteinID:
XP_023538244
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Position
LG07:complement(2047229..2048711)
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AA seq
274 aa
AA seq
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MSILPKGESIHIREVWNHNVEEEFALMREIVDKFNYIAMDTEFPGVVVRPVGAFKNINDY
NYQTLKDNVDTLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNISNDIFASDSIEL
LRQCGIDFQKNNEEGIDVNHFGELLMSSGIVLNDNVYWVTFHSGYDFGYLLKLLTCRSLP
GTQAAFFDLINMYFPMVYDIKHLMKFCNSFHGGLNKLAELLEVERIGVCHQAGSDSLLTA
CTFRKLRDTFFNGSTQKYAGVLYGLGVETGQTTN
NT seq
825 nt
NT seq
+upstream
nt +downstream
nt
atgtccatattgccgaaaggtgagtcgattcatatccgtgaggtgtggaaccataacgtg
gaggaagagttcgctctaatgcgtgaaattgtcgacaaatttaattacatagcgatggat
actgagttccccggcgtggtggttcgccctgtgggtgcttttaagaatatcaacgattat
aactatcaaaccctcaaagataatgtcgacacgttgaagttgattcagttgggtcttacg
ttttctgatgagaatgggaatctcccaacttgtggaacagataagttttgcatttggcag
tttaatttcagggagttcaacattagtaacgatattttcgctagtgattccattgagctt
ttgcgccagtgtggtattgattttcagaagaacaatgaagagggtattgatgtcaatcac
ttcggtgagcttctaatgtcatctgggattgttttgaacgataatgtttactgggtgacc
tttcacagtgggtatgattttgggtacttgctgaaattgttgacttgccgaagcctacca
gggacgcaggctgcattctttgatttgatcaatatgtatttcccaatggtttatgacatc
aagcatttgatgaagttttgcaacagtttccatggtgggctgaacaagcttgcagagtta
ttagaagtggaaaggattggagtttgccatcaagcaggatcagatagcctccttactgcc
tgtactttcaggaagttgagggatacttttttcaatgggtctactcagaaatacgccggt
gttttatatggtctgggcgttgaaactggccagactactaattaa
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