Cucurbita pepo subsp. pepo (vegetable marrow): 111799917
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Entry
111799917 CDS
T05351
Name
(RefSeq) uncharacterized protein LOC111799917 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111799917
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpep03021
]
111799917
03019 Messenger RNA biogenesis [BR:
cpep03019
]
111799917
Transcription machinery [BR:
cpep03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
111799917
Messenger RNA biogenesis [BR:
cpep03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
111799917
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
CFIA_Pcf11
zf-C2H2
zf-C2H2_4
Motif
Other DBs
NCBI-GeneID:
111799917
NCBI-ProteinID:
XP_023539204
LinkDB
All DBs
Position
LG08:complement(7980749..7988613)
Genome browser
AA seq
1085 aa
AA seq
DB search
MEMESSRRPFDRTREPGLKKQRLADEAERGGNINGRPFPQRPIGSGTNIVQPRFRASDRD
SGSSDSGRGGYQPQPLQHQELVSQYRTALAELTFNSKPIITNLTIIAGENLQAAKAISAT
VCANILEVSSEQKLPSLYLLDSIVKNIGRDYIKYFAAKLPEVFCKAYRQVDSPVHTSMRH
LFGTWKGVFPPQTLQVIEKELGFITNSGSSSGTISSKPELQSQRPPHSIHVNPKYIERQR
LQQSGRVKGMTSDATIATTNVTQDVAQAKISTGRPWADASIKVHDIQRPLRDAPNDMAQE
KNITAAYADYEYGSDLSRTPGIGRRAVDEGRDKPWSTTGSNLAEKLSGQRNGFNIKLGYE
NYPAPRSANTGARLLPTQNFSSSSSNRGLSTNWKNSEEEEFMWGEMNSMLTGHSASAIAS
SIGKDQWTPEDSDNSGIENKLLSLRDTGGSVDREASSDSQSSEQRELGDSGQQRSSMWQV
QEPLSLDGLRGGIPKKNSAQSGGYGTTLTALSGGNSSVDQMGGRPQITSSNIGASGHEFL
NKGGSGSIGTVGQQIFPSRNVAFASGQPPLHQRPPSPLSVDHIPHQMPNHKTSSFSNLDP
RKRHLQDASLGRHPNVQSDNLKKPQPQDRQAAASSIPTSQPRQPFSLSESLKPDVRQSEL
SRQHAVSIPGTDFGPPSSAGTVPVRLPAEILGETSTSSLLAAVMKSGIFSNHSIASSMQQ
NISFQDAGNMQPHSNVKPPLPSRSSPAHTQTTFSEPKTAGESSLGPLESPSALVKLSQTK
VEDTPLPSDPPSPSSPMTSASTETSNVVNDSSTPISNLLSSLVAKGLISASKGELTNSAT
SQMPAQPENLKLGDAVTCSVPVPSIPATSSSQSSTILESSSKAAAKSSTSPPPFATTEIT
NLIGFEFSSHVIRKFQPSVISGLFDDIPYQCKICGLRLKLEEQLDTHLQWHTLRTEANNS
NRTPRRWYPSSDDWISGNDILLHDAATSPDRCDMMEEVNEPMVPADEDHLVCVLCGELFE
DFYSHDLDKWMFKGAMYITIPSAVSEIGSTNEQVARGPIVHTKCITESSLHDLGLATDIK
MEMDV
NT seq
3258 nt
NT seq
+upstream
nt +downstream
nt
atggaaatggagagctcgcggagacctttcgatcgaacgagggaaccgggtttgaagaag
cagcgactggccgatgaggctgagcgcggtgggaacattaatggccggccgtttccgcag
agaccaattggttcggggaccaatattgtgcaacccagatttcgagcaagtgatagagat
tcgggaagcagtgattctggtcgaggggggtatcagcctcaaccactgcagcatcaggag
cttgtcagccaatacagaacagcccttgctgagctgactttcaattcgaaaccaatcatc
acgaatttgaccataatcgcgggtgaaaatctccaggctgcaaaagccatctctgccacc
gtttgcgccaacattcttgaggtttccagtgagcagaagctaccatcactttatctattg
gacagtattgtgaagaatattggaagagactacataaaatactttgcagcaaagctgccc
gaggtattctgcaaagcttataggcaagttgactctcctgtacatacaagtatgagacat
ctttttggcacctggaaaggagtgtttcctcctcaaacactgcaggttatcgagaaagaa
cttggcttcataaccaacagtggttcttcttctgggaccatatcctcaaagccagaattg
cagtcacaacgtccaccccatagtatccatgtaaatcccaagtatatagagagacaacgg
cttcaacagtcgggcagggtgaaaggaatgactagtgatgctactattgcaactacaaat
gtaactcaggatgttgcccaagccaaaattagcactggacgtccatgggcagatgcttca
attaaagtgcatgacattcagcgtccacttagagatgcaccaaatgatatggcacaagag
aagaacatcacggctgcatatgcagattacgaatatggttccgatctttcgaggactcca
ggtatcggaagaagggctgttgatgaagggcgagacaaaccttggtctacaactggtagc
aatttggcagagaagttatctggccaaagaaatgggttcaacatcaagcttggatatgaa
aattatcctgcacccaggtctgcaaacactggtgcacgtctactgcccacgcaaaatttt
tcaagcagcagcagcaaccgaggattgtctactaactggaagaactctgaggaagaggag
ttcatgtggggtgaaatgaactctatgttgacaggtcatagtgcatctgccattgccagt
agcattgggaaagatcaatggactcctgaggattcagataattcgggtattgaaaataag
ctattaagtttacgagatactgggggaagtgttgatagagaagcttccagtgattcacaa
tcatctgagcagagagaactgggggattctggacagcaaaggtcatcaatgtggcaagtg
caggagccattgtctctggatgggctgagaggcgggattcctaaaaagaattcagctcag
tcgggaggatatggtaccactcttactgccctgtcaggtggtaactcttctgtggatcaa
atgggaggtcgaccacaaattacatcgtcgaatattggagcttcaggacatgaatttctg
aacaagggaggttcagggtccattgggactgtaggccagcaaatatttccatcacgaaat
gttgcattcgcatctggacagccacccttgcatcaacgtcccccttcaccattgtcagtg
gatcatattcctcatcaaatgcccaaccataaaacttcttcattttctaaccttgaccca
cgtaaaaggcatttacaggatgcttcccttggtcggcatcccaacgttcagtcagataac
cttaaaaaaccacagcctcaggaccgtcaagctgcagcctcctccatacctacttctcaa
cccaggcagccgttctctttatctgagtcactaaaacctgatgttaggcagtccgaactt
tcaagacagcatgcagtatctattccaggcactgattttggacctccttcatcagctggg
acagttccagttcgtttacctgcagaaattttgggagagacaagcactagtagtttgttg
gctgccgtaatgaagagtggaattttttccaaccattcaatagccagtagcatgcagcag
aatatcagcttccaagatgcaggaaatatgcaaccccattcaaacgtcaaacctccacta
ccaagccggtcttctcctgctcatactcagacgacattctcagagccaaagactgcggga
gaatcttcattaggtcctcttgaaagcccgtcagctctggttaagctatctcaaactaag
gtagaagatactccgttgccatctgatccaccttcaccctcatctcctatgactagtgca
tccacggaaacttcaaatgtggtaaacgactcttctaccccaatttctaaccttttgagc
tcattggttgcaaagggccttatatctgcttcaaaaggagaattaacaaatagtgcaact
tcccaaatgcctgcacagcctgaaaatttgaagttaggtgatgctgtgacatgttctgta
ccagttccttccatccccgctacttcttccagtcaatcatctacgatacttgaatcatcc
tcaaaagctgctgctaagagctccactagtccacctccatttgccacaactgagataacc
aacctcataggctttgaatttagttcacatgttattcgaaaatttcagccatctgtgatc
agtggactcttcgacgatattccatatcaatgtaagatctgtggtctgagactgaaactt
gaagaacagttggatacacacttgcagtggcacacattaagaactgaggcaaacaattca
aataggacaccaagaagatggtatccaagttcagatgattggatttctggaaatgatata
ctcttacatgatgctgccacttctccggacaggtgtgacatgatggaagaagttaatgag
ccaatggtacctgcagatgaagatcatttggtctgtgttttatgtggtgaactttttgaa
gatttttatagtcatgacttggacaagtggatgttcaaaggagcaatgtatatcaccatc
ccatcagcggttagtgagataggaagcacaaatgaacaagttgctagaggacccatcgtt
cacacaaaatgtataactgaaagttcactacatgacttgggactggcaactgatattaag
atggaaatggatgtatga
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