Cucurbita pepo subsp. pepo (vegetable marrow): 111802440
Help
Entry
111802440 CDS
T05351
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111802440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpep03021
]
111802440
03019 Messenger RNA biogenesis [BR:
cpep03019
]
111802440
Transcription machinery [BR:
cpep03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
111802440
Messenger RNA biogenesis [BR:
cpep03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
111802440
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
Ribonuc_2-5A
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
111802440
NCBI-ProteinID:
XP_023542573
LinkDB
All DBs
Position
LG09:complement(8158515..8164965)
Genome browser
AA seq
1005 aa
AA seq
DB search
MNRFMELEKLLISRGNPRAAAYSSDRQLPTTSGRDMPNELSQKPPSSIAHRFRVQLKQRD
DEFRVSGHDSVPPPSTEFIVQLYELMLSELTFNSKPIITDLTVLADEQREHGKGIADLIC
TRILEVPVDQKLPSLYLLDSIVKNVGHGYVSYFSSRLPEVFFEAYRQVHPNQHNAMRHLF
GTWSNVFPPSVLRKIEAQLSQLTTQESSGLTSSRASGSPRPTHSIHVNPKYLRQLEHSVV
DKHIQDARGTSALKVNGKKLAPGYEEYDYDHTDVLEHSGAQAFNSMGSVGHDSFALGTNK
ANIKIGKSSFSSRIGHNRPLQSVGDELEAVRASPLQNVYEYEGSRMMDRNEDAYKRRRTQ
YPEENLNGLESTSSYDIRNGRDLDGPRALIEAYGSDKGKGYLNDNPPQVEHFSISGMDNK
VTPVTWQNTEEEEFDWEDMSPTLADRGRSNDALKPSVPPSRFRTRLGFDRRNAMSMELGM
RNNWSSQVQLPTSIDSSIVIEDGVPSTSDIWNMHNPLSQSSQNLMNTKGTGRNFQMPVSR
RGIASSGGEKMSHFVDKLLTNGAVHRPPTIVSSLGSSGFDSSMESQSVVQSMGPRHPVNV
PDSCPPSRSSIFPVPRHHKSQFESLNGSNSVINRANRSFLPEQQMNNLRNKEPSLATNLP
QVGNQHTGHIPLTQGNQLQATSLKPKFLPSPDMQDNFSASAVPPALPHLMAPSSNQGYSS
QGHRPVVSDCLSSSAPIGQWNLPVHNRPSTLHLQGGPLPPLPTGPHPISQNAGSLVPGQQ
PGTAFSGLINSLMAQGLISLNHQASVQDSVGLEFNPDLLKVRHEYAITSLYADLPRQCMT
CGLRFKSQEEHSNHMDWHVTRNRMSKSRKQKPSRKWFVSTTMWLSGAEALGTEPVPGFLP
AEVIVEKKDDEELAVPADEDQKTCALCGESFDDFYSDETEEWMYRGAVYMNAPDGQTAGI
DKSQLGPIVHAKCRTESSAAPSENLDQDEQGGVSEEGNRRKRLRS
NT seq
3018 nt
NT seq
+upstream
nt +downstream
nt
atgaaccgtttcatggaattggaaaagctcttgatttcacgtggaaaccctagagctgca
gcatattcatccgaccgccaactccccaccaccagcggtagggatatgcccaatgagttg
tcacaaaagcctccctcttcaattgcgcaccggtttcgagttcagttaaagcagcgggat
gacgaattcagggtttctggtcatgattctgtgccccctccttccaccgagtttatcgtg
cagttatacgagcttatgttgtcggagctcacctttaattccaagcccatcattacggat
ctcactgttcttgcggatgagcagagagaacatgggaagggcattgctgacttaatttgt
acgcgtattctcgaggtaccggttgaccaaaaacttccttcattgtatctattggacagt
attgttaagaatgttgggcacggatacgttagttatttctcgtctcgtttacctgaggta
ttttttgaggcttacaggcaagttcatcctaatcagcacaatgcgatgcgtcacctcttt
gggacatggtcaaatgtatttccaccatccgtccttcggaagattgaagctcaactttct
cagctaacaacacaagaatcctcaggtttgacatcctcaagggcttctgggtctcctcgg
ccaactcatagcattcatgtcaatccaaaatacttgcgtcaactggaacactcagtggtg
gataaacatatccaggatgcgagagggacctcagctctaaaagttaatggtaaaaagctt
gctcctggatacgaagagtatgactatgaccatacagatgttcttgaacatagtggagct
caagcatttaattcaatgggaagcgtgggtcacgattcttttgctcttggaacaaataaa
gcaaatataaagatagggaaatcgtctttttcttcaagaattggacacaatagacctcta
caatcagttggtgatgagcttgaagcagttagagcctcaccattgcagaatgtatatgaa
tatgaaggttctagaatgatggatagaaatgaggatgcatataaaaggaggagaacacaa
tatcctgaggagaatttgaatggacttgaaagtacttcttcgtatgatattagaaatgga
cgtgaccttgacggaccaagagcgttaattgaagcatatggaagtgataaaggaaaaggt
tatttaaatgacaatccaccacaggttgaacatttttctatttctggtatggacaacaag
gtgactccagttacttggcagaacactgaagaagaagagtttgattgggaagatatgagt
cccacattagctgacagaggcagaagtaatgatgcattgaaaccatctgtcccaccttca
agatttaggacaagattaggattcgacagaagaaatgctatgtctatggagcttggaatg
agaaacaattggtctagtcaggttcagctacctacttctattgactcctccatagtgatt
gaagatggggtcccatcaacatctgatatttggaatatgcacaatcccctttctcagtca
tcccagaacctcatgaacactaaaggaacaggaaggaatttccagatgcctgtgtcgaga
agaggcatcgcttcatctggtggtgagaagatgtctcattttgtcgataagcttctgacc
aatggtgctgtacataggccccctactattgtttcaagcttgggttcttctggttttgac
tctagcatggagtcacaatcagttgtacaatctatgggcccaaggcatcctgtgaatgtt
cctgactcttgcccaccttctaggtcttcaatatttcccgtaccaagacaccataagagt
cagtttgagtctttaaacggtagcaattctgtcatcaatcgtgcaaataggtcctttttg
cctgagcagcagatgaataatttgagaaataaagagccaagtcttgcgactaatttgcca
caagttggtaatcaacatactgggcatattcctttgactcagggaaaccaattgcaggcc
acctctttaaaacctaaatttctaccatctccagacatgcaggataattttagtgcatca
gcagtacctccagcgttaccacatttaatggcaccatcctcgaatcagggatacagttca
caaggacatcgccctgttgttagtgattgtttgtcaagttctgcccctattgggcaatgg
aacttacctgttcataatagacccagcactttgcatttacaaggggggccgctgccacct
ctaccaactggtcctcatcctatctctcaaaatgcaggatcccttgttcctggtcagcaa
ccaggaactgcattttctggcctgataaattctcttatggcccagggtttaatctcattg
aaccatcaagcttctgtacaggactctgttgggttggaattcaatccagatctactcaag
gtgcggcatgaatatgcaataacttctctgtatgctgatcttcctagacaatgcatgacc
tgtggccttcggttcaagtcccaggaagagcatagtaatcatatggattggcatgtcact
agaaatcgtatgtcgaaaagtaggaagcaaaagccttctcgtaagtggtttgtaagtaca
accatgtggcttagtggtgcagaagccttgggaactgagccagttccaggatttttgcct
gctgaggtcatcgtagagaaaaaggatgatgaagaactagctgttcccgctgatgaagat
caaaaaacgtgtgcactatgtggagaatcttttgatgatttttacagtgatgaaacagag
gaatggatgtataggggtgctgtctacatgaacgcacccgatggacaaacagcaggcatt
gataaatctcagttagggcccatagtgcatgctaaatgcaggactgaatctagtgctgcc
ccctccgaaaatttggaccaagatgaacaagggggagttagtgaagagggtaatcgaaga
aaacgattgcggagctag
DBGET
integrated database retrieval system
