Cucurbita pepo subsp. pepo (vegetable marrow): 111805700
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Entry
111805700 CDS
T05351
Name
(RefSeq) DNA ligase 4 isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
111805700
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cpep03400
]
111805700
Enzymes [BR:
cpep01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
111805700
DNA repair and recombination proteins [BR:
cpep03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
111805700
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
DNA_ligase_A_C
BRCT
PTCB-BRCT
RNA_ligase
DNA_ligase_IV
Motif
Other DBs
NCBI-GeneID:
111805700
NCBI-ProteinID:
XP_023546648
LinkDB
All DBs
Position
LG11:complement(3868323..3883421)
Genome browser
AA seq
1205 aa
AA seq
DB search
MTELIKFSVLSSLFDWIQRSKSSAKKRSKFRKFIDTFCSPADYFSAIRLILPSLDRERGT
YGLKESVLATCLIDALGMSRESEDALRLINWRKGGAKTGANVGNFALVAAEVLQRRQGMT
PGGLLIKELNDLLDRLALTENRAEKTAVLSTLIQKTNAQEMKWIVMIILKDLKLGVSEKS
IFHEFHPDAEDLFNVTCDLKLVCEKLRDRRQRHKRQDIEVGKAVRPQLASRVSNANAAWK
KLHGKEVVVECKFDGDRIQIHKNGTEIHYFSRNFLDHSEYGHGMSDVIVQNVLATRCILD
GEMLVWDKSLNRFAEFGSNQEIARAAKDGFDSNRQLCYVAFDVLYVGDTSVIHRSLKERH
ELLRGVVKPVKGQLEILVPNGGLNSDCAGDPSWSIRAYNVDDVERFFKSTIENRDEGIVI
KDLSSKWEPGDRSGKWLKLKPDYIHAGSDLDALIIGGYYGSGRRGGEVAQFLMGLAERPP
SNAYPRRFISFCRVGTGLTDEELDSVVNKLKPYFRKSEYPRKTAPSFYQVTNNSKERPDV
WIESPEKSIILSITSDIRTIKSEVFAAPYSLRFPRIQRVRYDKPWHECLDVQSFVELVHS
SNGTTQRGTNNSGWQDSKRKYINSTGKGRKKSVSVVPSHLLQTDISGIKGDSLIFSNMLF
YIVNVPPTHSLDSLHKLIVENGGTFSMNLNNSVTHSVAADSKGIKYEAAKRHGDVIHYSW
VLECCSQKKLLPLMPKHFLFLSDHSKKKLEEEIDEFSDSYFWDLELADLKQLLSNVSRSE
DVKAIDYYREKYCPKHEWCIFSGCQIYFHPLKPSLKSDWDALLELSVRRLKVEVSFRGGK
VSDDRVSATHIVVFFIPGPPVKYEAVLKSCNEADKHVMLKDKTHIVAHQWLEDCLERAQR
LQEDAYSLNPNTKKSIEKLNSGIGSETPSASENIDNQQIPSASKEYKDLGGNESASGQHM
LSHSTKRSGGKKRGRPAASSMQKGKSSIEQVRRVLPRRTKGPAKINEVESDSSDHTNEKT
NAETGNIGTLCSESLGKNEFRMLENEKCVENKRGSPERNTQKGKAKVEQVRRTRARIAKG
DGSDYTDVKTNAEEAEMERGNVGTVCKDNSKTEELKMLEDCDWKQKGKAIEQIDVADPKS
KNSENSEKLEVMTDPLQAMLLDMVPSLGMSETKSSSSSSSVLEEKQPAKKKVSYKDVASE
LLKDW
NT seq
3618 nt
NT seq
+upstream
nt +downstream
nt
atgacggaactgatcaagttcagtgtgctttcaagtctgtttgattggattcagcgaagc
aagtcttccgccaagaagcgttccaagtttcgtaagtttatcgacaccttctgcagtcct
gctgactatttttctgccatccgcttgattctgcccagccttgatcgagagcgcggcacc
tatggcctcaaggagtctgtactcgccacttgccttattgacgctcttggcatgtctaga
gagtctgaggacgctcttcgtcttatcaactggcgcaaaggtggtgctaagactggtgct
aatgtcggtaatttcgctcttgttgcggctgaggtattgcagcgcaggcaaggaatgacc
cctggtggtctattaattaaagagttgaatgatttgctggaccgtttggctttaaccgaa
aacagagcagagaaaaccgcagttctgtctactcttatacagaagacaaatgcacaggaa
atgaaatggattgtcatgataatcctcaaagatctgaaactgggagtcagtgaaaaaagc
atttttcatgagtttcatccagatgcagaagacttattcaatgtcacttgtgacttaaaa
ttggtttgtgaaaaactaagggatcgtagacaaaggcataagcgtcaggacattgaagtt
ggtaaagctgtacgacctcagttggcttcaagagtgtccaatgcaaatgctgcatggaaa
aagcttcatgggaaggaagttgtagtcgaatgcaagtttgatggtgaccgtattcaaatt
cataagaatggaactgaaatacactacttttcaaggaactttctcgatcactcagaatat
ggacatggaatgtctgatgttattgttcaaaatgttcttgccactaggtgtatacttgat
ggtgaaatgttggtgtgggataaatctttaaaccgttttgcagagtttggctcaaaccag
gaaatagcgagggcagcaaaggatggatttgacagcaatcgtcagttatgctatgtcgcg
tttgatgttctttatgttggagatactagtgttattcacaggagtttgaaagaaaggcac
gagcttctcagaggtgttgtcaagcctgtgaagggtcaattggaaatcttagtacctaat
ggtggtcttaatagtgactgtgctggggatccttcttggtcaatcagagcttataatgtt
gatgacgtggaaaggttctttaagagtaccattgaaaatagagatgaaggtattgttatt
aaggacctgagttctaaatgggaacctggtgatcggagtgggaagtggttaaaattaaag
cctgactacattcatgcaggatctgacttggatgccctcatcataggaggttactatggc
tctggacggcggggtggggaggtcgctcaatttttaatgggtcttgctgagcgtccaccc
tcaaatgcatatcccagacggtttatttccttctgcagagtaggaactggacttactgat
gaggagttagattctgttgtaaataaactgaagccttattttcggaaaagtgaatatcca
aggaagactgcacccagcttttaccaagttacaaataattcaaaagaaagaccagatgtt
tggattgaaagccctgagaagtcaatcatactttccattaccagtgatatacgaactata
aaatctgaggtctttgcagcaccatatagcctaagatttccacgcatacaacgtgttcga
tatgacaaaccttggcatgaatgtcttgatgttcaatcttttgtagagcttgttcattca
agtaatggtaccacacaaaggggcacaaataatagtggctggcaagatagtaaacgaaag
tacattaattccactggaaagggaaggaaaaagagtgtttctgttgttccttctcattta
cttcagactgatatttcaggcattaaaggggactccttgattttctcgaatatgttattt
tacattgttaatgtgcctccaacccattctctcgattccttgcacaaattgatagtggag
aatgggggcacattctctatgaatttgaataattctgttacacactctgttgcagctgat
agcaaaggcatcaaatatgaggctgccaaacgtcatggagatgttatacattattcttgg
gtgttggaatgttgttcccagaagaaactactacctctaatgcccaagcattttctcttt
ctctctgatcactcaaagaaaaaattggaggaggaaattgatgaattttcggactcgtac
ttctgggatcttgaacttgcagacctgaaacagctgttaagcaacgttagtagatcagaa
gatgtgaaagctattgactactacagggaaaaatattgtccaaaacatgaatggtgtatt
ttttctgggtgccaaatttactttcatcctttaaaaccatctttgaaatctgattgggat
gccctgttggagctttcagtaaggaggttgaaggttgaagtttccttcagaggtgggaaa
gtcagtgatgatcgtgtttctgctacccacattgtagtcttctttatacctggaccgcct
gtaaaatatgaagcagtgttgaaaagttgcaatgaagcagataaacatgtcatgttgaag
gataagactcatattgttgcacatcagtggttggaagactgtttggagagggcccaaagg
ttgcaagaagatgcatatagcttgaatcccaatacgaaaaagtcgatcgaaaagttaaac
tctggaataggctctgagacaccatcggcctcagaaaatatagacaatcagcaaattcct
tctgcttccaaggagtataaagatctgggaggaaatgaatctgcttcaggacaacacatg
ctctcacattcaactaagagatctggtggaaagaaaagaggaaggcctgctgcaagtagc
atgcaaaaagggaaatcgagtatcgaacaagttcgaagagttttgccccgaagaaccaag
gggcctgcaaaaataaatgaagttgaatcagacagcagtgaccatactaacgaaaagaca
aatgcagaaactggaaatattggaacactctgcagtgaaagcttaggaaagaacgagttt
cgaatgctggaaaacgagaaatgtgtcgagaataaaagaggaagtcctgaaaggaacaca
caaaaagggaaagcaaaggtggagcaagttcgaagaactcgggcacgtatagccaagggg
gacggcagtgactatactgatgtgaaaacgaatgcagaagaagctgaaatggagagagga
aatgttggaacagtatgcaaggataactcaaaaacagaggagcttaaaatgctagaagac
tgtgattggaaacaaaaggggaaggccattgaacaaattgatgttgctgaccccaaatcc
aagaattctgaaaattctgaaaagcttgaagtcatgactgatcctcttcaggccatgtta
ttagatatggttccaagtctaggaatgagtgaaactaaaagtagcagcagcagcagttct
gttcttgaggagaagcaaccagctaagaagaaagtgagctacaaggacgttgccagtgaa
ctgcttaaggattggtaa
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