Corynebacterium pseudotuberculosis 316: CP316_04215
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Entry
CP316_04215 CDS
T01753
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cpg
Corynebacterium pseudotuberculosis 316
Pathway
cpg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CP316_04215
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpg03019
]
CP316_04215
03009 Ribosome biogenesis [BR:
cpg03009
]
CP316_04215
Enzymes [BR:
cpg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CP316_04215
Messenger RNA biogenesis [BR:
cpg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CP316_04215
Ribosome biogenesis [BR:
cpg03009
]
Prokaryotic type
rRNA helicases
CP316_04215
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
UvrA_inter
CMS1
adh_short
Motif
Other DBs
NCBI-ProteinID:
AFB72150
LinkDB
All DBs
Position
886228..888228
Genome browser
AA seq
666 aa
AA seq
DB search
MSITDDATGGANEPDEKILSESQDNSQVNEGSITLDDVIADVDDSRVANTSEDTGSAQEA
DSDSNDGFEALGLPDAILKAVAKVGFETPSPIQAQTIPVLMEGHDVMGLAQTGTGKTAAF
ALPILSRINVKKRHPQALILAPTRELALQVADSFQSFADHLGDIHVLPIYGGQAYGIQLS
GLRRGAQIIVGTPGRVIDHLEKGSLDISNLNYLVLDEADEMLSMGFQEDIERILEDTPAD
KQVALFSATMPNGIRRLSKQYMKDPREIQVKSETRTNTNITQRFLNVAHRNKLDALTRIL
EVTEFEAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILV
ATDVAARGLDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSI
ERATNAELIEMDLPTVDEVNESRKEKFADSITESLEDSQVAIFRNLIKAYAEEHDTPLED
IAAALATQARAGSEFLMKEPPPEKRRERRDRFDRDDRRGDRRDRGDRRDRGDRGSRFERS
GDMAVYRLAVGKRQHVRPGAIVGALANEGGLSNKDFGRITIAVDYTLVELPKGLPKSVFD
NLRDTRISGQLINIEKDNGRPGRRDDYRGDDRRGGYRRDRRDDRRGDRRDRGDRRDRGER
RDRYRG
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atgagcattaccgatgacgccaccggcggcgctaacgagccggatgagaagattttgtcg
gaatctcaggacaattcgcaggtaaacgaaggcagcatcacacttgatgatgttattgct
gatgtagacgactccagggttgcgaacacttctgaggacaccggctccgcgcaagaagcg
gacagtgacagtaatgatggcttcgaggctttgggcctcccagacgcaatccttaaggca
gtcgccaaggttggctttgaaacgccgtctcctattcaggcacagaccatcccagtcctc
atggaggggcatgatgtgatgggtctggctcagaccggtacgggtaagaccgctgcgttt
gccctcccgattctttcccgtatcaatgtgaagaagcgccacccacaggcgctgatcctt
gctcctactcgcgagcttgctcttcaggttgcggactctttccagtcttttgcagaccac
ctcggagacattcatgttctgccgatctatggtgggcaggcctatggtatccaattgtcg
ggtcttcgtcgtggcgcgcagatcatcgtgggtaccccaggtcgtgttattgaccacctg
gaaaagggctcactcgatatctctaacctgaactatctcgttcttgacgaggcagatgag
atgctcagcatgggcttccaggaagatatcgagcgtattcttgaggatactcccgcggac
aagcaggttgctttattttctgcgactatgcccaacggcattcgccgtctgagcaagcag
tacatgaaggatcctcgtgagattcaggtgaagtccgagactcggaccaacaccaatatc
acgcagcggttccttaatgttgctcaccgtaacaagcttgatgccttgactcgaatcctt
gaggtcaccgagtttgaagcgatgattatgttcgtacgcacaaagcatgaaactgaagag
gtcgcagagaagctgcgtgctcgtggtttttctgccgccgccatcaatggcgatatcgca
caggcacagcgtgagcgcaccgtggaccaactcaaagatggtcgtctagacattcttgtg
gccacagacgtggcagcgcgtggtctggatgttgagcgcattactcacgtgttcaactac
gacattcctaatgacaccgaatcttatgttcaccgcattggtcgtaccggccgcgctggg
cgtagcggtgaggcaattctttttgttaccccacgtgaacgtcgtatgctgcgctccatt
gagcgtgctaccaatgcagagcttatcgaaatggaccttcctacggtcgacgaggttaac
gagtcccgtaaggaaaagtttgcagattccatcacagaatcgctagaagactcccaggtt
gcgattttccggaacttgatcaaggcctacgcagaagagcatgacaccccacttgaggac
attgctgctgccttggctacccaggctcgtgctggtagtgagtttttgatgaaggagcca
ccaccagagaagcgtcgtgagcgtcgcgatcgctttgaccgggacgatcgtcgtggcgat
cgccgggaccgcggcgaccgccgtgatcgtggtgaccgcggttctcgttttgagcgctct
ggcgatatggcagtgtatcgccttgccgtgggtaagcgtcagcatgttcgtccgggcgct
attgttggcgcactggcaaacgaaggcggattgagcaataaggactttggtcgtatcaca
attgctgtggactacacattggtggagcttcctaagggactcccaaaatctgtctttgat
aatctacgcgacactcgtatctcgggtcagctgattaacattgagaaggacaatggtcgt
ccggggcgtcgtgatgattaccgcggtgatgaccgtcgtggtggataccgtcgcgatcgt
cgtgatgatcgtcgtggcgaccgccgggaccgcggcgaccgccgtgatcgtggtgagcgc
cgcgatcgctatcgtggctag
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