Clavibacter phaseoli: FGI33_01810
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Entry
FGI33_01810 CDS
T08435
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cpha
Clavibacter phaseoli
Pathway
cpha03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cpha00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FGI33_01810 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cpha03400
]
FGI33_01810 (mfd)
Enzymes [BR:
cpha01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FGI33_01810 (mfd)
DNA repair and recombination proteins [BR:
cpha03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FGI33_01810 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
DUF3638
Motif
Other DBs
NCBI-ProteinID:
UKF35895
LinkDB
All DBs
Position
373164..376796
Genome browser
AA seq
1210 aa
AA seq
DB search
MILQGLIPALSRASTFDDALASASRDADFSLTEGLQGPLLAGLLRQRIQRGIPGCLLVVT
ATGRESEGMRRSLAAVLPDAEILEFPAWETLPHERLSPSAEIVGKRIHALRRMEAWHAAL
GQGAREVPAAEVRPLVIVASVRAALQPVADNLTELAPVRLATGSRGHDLSELAVRLVDLA
YSRVDMVTRRGEFAVRGGILDVFPPVSDHPVRVEFFGDEVDQMRPFAVADQRSLEETVDS
VELPPSRELLLSAPVRQRAREMQHEFPNLQQMLAKIAEGIPVEGMESLAPALVDRLVPVT
HYLPVDAAIAVVSPERVSTRAQSLADTNREFLDAAWNAATAGAQAPIDLASGDFLSLGRL
RDARGPRRWWTLSGFQATDVLPEDLGIDEVMTVRIQADPVPSFAGNADGAIEHVRERLAA
GWSVGVVAQGSGLVERADTVLREAGVPARVVEEFPAEPEPGIAYLLRSAIDAGFEMPEVK
LALLTESEFYGRAAGYDSRQVKKLATRRKNVVDPLQLKPGDHVVHTTHGIGRFVELTQRE
VSSGGRNAVKTRREYLVIEYAPSKRGYPGDKLFVPTDQLDLLSRYVGGEEPALSKMGGSD
WAAAKGKARRAVRDIAVELVKLYSARMASRGHSFPPDTPWQRELEEAFPFMETPDQLTVI
DEVKRDMESPIPMDRLVSGDVGFGKTEIAVRAAFKAVQDGKQVVMLVPTTLLVKQHFETF
SERFAGFPVHLRQLSRFQTDKESRETVKGLEDGSVDVVIGTHRLLTGSIAFKDVGLVIID
EEQRFGVEHKDALKKLKANVDILAMSATPIPRTLEMAVTGIREMSTLATPPEDRHPILTF
VGPNSEKQIAAAIRRELLREGQVFFVHNRVSSINRVASELAELVPEARVAVAHGKMSEAM
LEQVIVDFWERKFDVLVSTTIIETGLDIANANTLIIDRADKYGLSQLHQLRGRVGRGRER
AYAYFLYDADKPLSETAHDRLSTIAANNELGSGMQVALKDLEIRGAGNLLGGEQSGHIQG
VGFDLYLRMIGEAVSTFRGDVAEGQTELRLELPVDAHIPEEYVDSERLRLEAYQKLSTAA
SPTATDDQIDRVIEELSDRYGEPPVEVDNLVRVSRLRRVAQRAGLSEVVAMGPNLRIAPA
DLADSKQVRLQRMYPGSRLFAQTNAVTVPLPKRDGEPLPDAELVDWVRQLLDAVFTVEPA
PAAKESAPKA
NT seq
3633 nt
NT seq
+upstream
nt +downstream
nt
gtgatcctccagggcttgatcccggcgctctcgcgcgcctccacgttcgacgacgccctc
gcatcggcctcccgcgacgccgacttctccctcaccgaggggctccaggggccgctgctc
gcggggctcctgcgccagcgcatccagcgcggcatcccggggtgcctgctcgtcgtcacc
gcgaccggccgcgagtccgagggcatgcgccgcagcctcgccgcggtgctgccggacgcc
gagatcctcgagttcccggcctgggagacgctgccgcacgagcgcctcagcccgagcgcc
gagatcgtgggcaagcggatccacgcgctccgccgcatggaggcgtggcacgccgcgctc
ggccagggcgcccgcgaggtgccggccgccgaggtgcgcccgctcgtcatcgtcgcctcg
gtgcgcgcggccctccagcccgtggccgacaacctcaccgagctggcgcccgtgcggctc
gccaccggcagccgcggccacgacctgtccgagctcgccgtgcggctcgtcgacctcgcg
tactcgcgcgtcgacatggtcacgcgccgcggcgagttcgcggtgcgcggcggcatcctc
gacgtcttcccgcccgtgtcagaccaccccgtgcgcgtcgagttcttcggcgacgaggtc
gaccagatgcggccgttcgccgtcgccgaccagcgctccctggaggagaccgtcgactcg
gtcgagctgccgccgagccgcgagctgctcctgagcgcgcccgtgcgccagcgcgcccgc
gagatgcagcacgagttcccgaacctgcagcagatgctcgcgaagatcgccgagggcatc
ccggtggagggcatggagtcgctggcccccgcgctcgtcgacaggctcgtccctgtcacg
cactacctgccggtcgacgcggccatcgcggtggtctcgcccgagcgcgtctccacgcgc
gcccagagcctcgccgacacgaaccgcgagttcctcgacgccgcgtggaacgccgcgacc
gcgggcgcgcaggcgcccatcgacctcgcgtccggcgacttcctctccctcggccgcctg
cgcgacgcccgcggcccgcgccgctggtggaccctctcgggcttccaggccaccgacgtg
ctgccggaggacctggggatcgacgaggtcatgaccgtgcgcatccaggcggatcccgtg
ccgagcttcgcgggcaacgccgacggcgccatcgagcacgtgcgcgagcgcctcgccgcc
gggtggagcgtgggcgtcgtggcccagggatccggcctcgtcgagcgcgccgacaccgtg
ctgcgcgaggcgggcgttccggcgcgcgtggtcgaggagttcccggcggagcccgagccc
ggcatcgcctacctgctgcgctccgccatcgacgcgggcttcgagatgcccgaggtcaag
ctcgcgctcctcaccgagagcgagttctacggccgcgccgccggctacgacagccgccag
gtcaagaagctcgccacccggcgcaagaacgtggtggatccgctgcagctcaagcccggc
gaccacgtcgtgcacaccacgcacggcatcggccgattcgtggagctcacgcagcgcgag
gtctcctccggcggccgcaacgccgtgaagacccggcgcgagtacctcgtcatcgagtac
gcgccctccaagcgcggctaccccggcgacaagctcttcgtgcccaccgaccagctcgac
ctcctcagccgctacgtcggcggggaggagcccgccctcagcaagatgggcggcagcgac
tgggccgccgccaagggcaaggcgcgccgggcggtccgcgacatcgcggtcgagctcgtg
aagctctactccgcgcgcatggcgtcgcgcggccactccttcccgccggacaccccgtgg
cagcgcgagctcgaggaggcgttccccttcatggagacgcccgaccagctcaccgtcatc
gacgaggtcaagcgcgacatggagagccccatccccatggaccgcctggtctcgggcgac
gtcgggttcggcaagaccgagatcgccgtgcgcgccgcgttcaaggccgtgcaggacggc
aagcaggtcgtgatgctcgtacccacgacgctgctcgtgaagcagcacttcgagaccttc
tccgagcgcttcgccggcttccccgtgcacctgcggcagctcagccgcttccagaccgac
aaggagtcgcgcgagaccgtcaagggcctcgaggacggctcggtcgacgtggtcatcggc
acccaccgcctgctcacgggcagcatcgcgttcaaggacgtggggctcgtcatcatcgac
gaggagcagcggttcggcgtggagcacaaggacgccctgaagaagctcaaggccaacgtc
gacatcctggcgatgtcggccacgccgatcccgcgcacgctcgagatggcggtcacgggc
atccgcgagatgtcgacgctcgcgacgccgccggaggaccggcaccccatcctcacgttc
gtgggcccgaacagcgagaagcagatcgccgcggccatccgccgcgagctgctgcgcgag
ggccaggtgttcttcgtgcacaaccgcgtgtcgagcatcaaccgggtcgcgtcggagctg
gcggagctcgtgcccgaggctcgcgtcgcggtcgcccacggcaagatgagcgaggcgatg
ctggagcaggtcatcgtcgacttctgggagcggaagttcgacgtgctcgtgtcgaccacg
atcatcgagaccggcctcgacatcgcgaacgcgaacacgctgatcatcgaccgggccgac
aagtacgggctcagccagctgcaccagctgcgcggccgcgtcggccgcgggcgggagcgc
gcgtacgcgtacttcctctacgacgccgacaagccgctgtccgagacggcgcacgaccgc
ctgtccaccatcgcggcgaacaacgagctgggatccggcatgcaggtcgcgctcaaggac
ctcgagatccgcggcgcgggcaacctcctgggcggcgagcagtccggccacatccagggc
gtcggcttcgacctgtacctccgcatgatcggcgaggccgtgtcgaccttccgcggcgac
gtcgccgagggccagaccgagctgcggctcgagctgccggtcgacgcgcacatccccgag
gagtacgtcgacagcgagcggctgcgcctcgaggcctaccagaagctctccacggcggcc
tcgcccacggccaccgacgaccagatcgaccgggtcatcgaggagctgtccgaccgctac
ggcgagccgcccgtcgaggtcgacaacctggtgcgggtctcgcgcctgcgtcgcgtcgcc
cagcgcgcggggctcagcgaggtggtcgcgatggggccgaacctgcgcatcgcgccggcg
gacctcgcggacagcaagcaggtgcgcctgcagcgcatgtacccgggcagccgcctgttc
gcgcagaccaacgccgtgacggtgccgctgcccaagcgcgacggcgagccgctgcccgac
gccgagctggtggactgggtgcgccagctgctcgacgccgtgttcacggtcgagccggcg
ccggccgcgaaggagtccgcgcccaaggcgtga
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