KEGG   PATHWAY: cphy00020
Entry
cphy00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Cnuibacter physcomitrellae
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cphy00020  Citrate cycle (TCA cycle)
cphy00020

Module
cphy_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cphy00020]
cphy_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:cphy00020]
cphy_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cphy00020]
cphy_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:cphy00020]
cphy_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cphy00020]
Other DBs
GO: 0006099
Organism
Cnuibacter physcomitrellae [GN:cphy]
Gene
B5808_15015  citryl-CoA lyase [KO:K01647] [EC:2.3.3.1]
B5808_11085  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
B5808_09655  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
B5808_05115  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
B5808_10605  2-oxoglutarate dehydrogenase E1 component [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
B5808_08420  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
B5808_09745  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
B5808_05060  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
B5808_05055  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
B5808_13060  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
B5808_07110  succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
B5808_13065  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
B5808_13050  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
B5808_13055  succinate dehydrogenase [KO:K00242]
B5808_18155  fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
B5808_11285  aspA; aspartate ammonia-lyase [KO:K01679] [EC:4.2.1.2]
B5808_14610  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
B5808_13405  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
B5808_07850  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
B5808_06590  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
B5808_09955  pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
B5808_16930  hypothetical protein [KO:K00627] [EC:2.3.1.12]
B5808_11405  hypothetical protein [KO:K00627] [EC:2.3.1.12]
B5808_09750  2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cphy00010  Glycolysis / Gluconeogenesis
cphy00053  Ascorbate and aldarate metabolism
cphy00061  Fatty acid biosynthesis
cphy00071  Fatty acid degradation
cphy00190  Oxidative phosphorylation
cphy00220  Arginine biosynthesis
cphy00250  Alanine, aspartate and glutamate metabolism
cphy00280  Valine, leucine and isoleucine degradation
cphy00350  Tyrosine metabolism
cphy00470  D-Amino acid metabolism
cphy00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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