Cnuibacter physcomitrellae: B5808_14620
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Entry
B5808_14620 CDS
T04797
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
cphy
Cnuibacter physcomitrellae
Pathway
cphy03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cphy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
B5808_14620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cphy03400
]
B5808_14620
Enzymes [BR:
cphy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
B5808_14620
DNA repair and recombination proteins [BR:
cphy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
B5808_14620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
LigD_N
DNA_ligase_A_C
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ARJ06308
UniProt:
A0A1X9LPS4
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All DBs
Position
3126244..3128952
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AA seq
902 aa
AA seq
DB search
MAPKKDEQVVTVGGHRLKITNLDKVLYPETGTTKGDVLRYYSQIAPFLIPHARNRPATRK
RWVNGVGTPEDPGSVFFQKDLDAGTPDWVKRVEIEHSEGPKTYPLVNDEATLVWLAQIAA
LEVHVPQWRVDAHGRRKNPDRFVIDLDPGEGAGLPECVEVAKRARRILTDMGLDPVPVTS
GSKGIHLYAALDGKQTSDQVSAVAHELARALEADDPDLVVSDMKKSLRTGRVLVDWSQNN
ANKTTICPYSLRGRFRPTVAVPRTWRELASKDLRHLELDEVLTRMRRRVDPLAESADAPG
SVEAPGGVWHSDRGADDQAEAHPGEPDRLTVYRSKRDAAKTPEPVPEASPADTGGRSFVI
QEHHASRLHWDFRLEHDGVLVSWALPKGVPTDAGQNHLAVMTEDHPLEYGTFEGTIPEGE
YGGGTVTIWDFGTYELEKWRDDEVIATLHGQPSGGLGEPRRVALIRTGGRGGKDPKNWLI
HLMKDQHSVDWDDPASVAASKERTRGGAKRASDGGAKRDSGSGAKRESSGGSSSRENSGS
SAEKRGSGSRESSGGSAAKRESTGGTKRAAAPAAHRDLFDRTRIPSPMLATLGQATDIRD
EDEWAFEMKWDGIRALVLADHGRVALVTRNGNDVTAAYPELVEELAAATADRELLLDAEV
VALDAKGRPSFGRLQQRMGLSKPREVEAAARRVRVDLMVFDLLEEDGESLVDEPYDERRR
RLEDALPASSGRLHVPPAFDGDLDHALTSSRELGLEGVMAKRRASTYTARRTRDWIKLKH
HLAQEVVIGGWRPGNGRRASQVGSLLLGVPDAEGGLRYVGRVGTGFTDRQLADIAAKLAP
LARKTSPFVDVPRPDARDAQWVTPKLVGEVEFAEWTGDDRLRQPSWRGWRTDKEPSDVVR
EG
NT seq
2709 nt
NT seq
+upstream
nt +downstream
nt
atggccccgaagaaggacgagcaggtggtcacggtcggtgggcaccggctgaagatcacg
aacctcgacaaggtgctctaccccgagaccgggacgacgaagggcgacgtgctgcggtac
tactcgcagatcgcgcccttcctcatcccgcacgcgcgcaaccggccggccacgcgcaag
cggtgggtgaacggggtcgggacgcccgaggacccggggtcggtgttcttccagaaggac
ctcgacgcggggacgcccgactgggtcaagcgggtggagatcgagcactccgagggcccg
aagacctatccgctcgtcaacgacgaggccacgctcgtctggctcgcccagatcgcggcg
ctcgaggtgcacgtgccccagtggcgggtggatgcgcacggccgccgcaagaaccccgac
cggttcgtcatcgaccttgaccccggcgagggcgcgggcctgcccgagtgcgtcgaggtg
gccaagcgcgcccgccgcatcctgaccgacatggggctcgacccggtccccgtcacgagc
ggcagcaagggcatccacctctacgccgccctcgacggcaagcagacgtccgatcaggtg
tcggcggtggctcacgagctcgcgcgcgccctcgaggcggacgaccccgacctcgtcgtc
agcgacatgaagaagtcgctgcgcaccggcagggtgctcgtcgactggagccagaacaac
gccaacaagacgaccatctgcccctactcgctgcgaggacgcttccgccccacggtcgcc
gtgccgcgcacctggcgggagctggcctcgaaggacctccgccacctcgagctcgacgag
gtgctgacgcggatgcggcgacgcgtcgatccactcgccgaaagcgccgacgcgcccggt
tcggtggaggcgccgggcggcgtgtggcactcggaccgcggggccgacgaccaggccgag
gcgcatccgggcgaacccgacaggctgactgtgtaccgatcgaagcgcgatgcggcgaag
acgcccgagccggtgcccgaggcgtcgcccgccgacaccggcgggcggtcgttcgtgatc
caggagcaccacgcctcgcggctgcactgggacttccgcctcgagcacgacggcgtgctg
gtgtcgtgggcgctgcccaagggggtgccgacggatgcgggccagaaccacctcgccgtg
atgacggaggaccatccgctcgagtacggcaccttcgagggcaccatccccgagggcgag
tacggcggcgggacggtcaccatctgggacttcggcacctacgagctggagaagtggcgc
gacgacgaggtgatcgccacgctccacggccagccgtcgggcggtctgggcgaaccccgg
agggtggcgctcatccgcaccggcggccgcggagggaaggatccgaagaactggctgatc
cacctcatgaaggatcagcacagcgtggactgggacgacccggcctcggtcgccgcgtcg
aaggagcgcacgcgcggcggcgcgaaacgcgccagcgacggcggcgcgaagcgcgacagc
ggcagcggcgcgaagcgcgagagcagcggcggcagcagctcgcgcgagaacagcggcagc
agcgccgagaagcggggcagcggctcgcgcgagagcagcggcggcagcgccgcgaagcgc
gagagcaccggcggcacgaagcgcgcggccgcgcccgccgctcaccgcgacctcttcgac
cgcacgcgcatcccttcgcccatgctcgccaccctcggccaggccaccgacatccgcgat
gaggacgagtgggcgttcgagatgaagtgggacggcatccgcgccctggtgctcgccgac
cacggcagggtggccctcgtgacccgcaacggcaacgacgtcaccgccgcctaccccgag
ctcgtcgaggagctcgcggcggccaccgccgaccgcgagctgctcctcgacgccgaggtc
gtggccctcgacgcgaagggccgcccgagcttcggccgcctgcagcagcggatggggttg
agcaagccgcgcgaggtcgaggcggcggccaggagggtcagggtcgacctcatggtcttc
gacctcctcgaggaggacggcgaatccctcgtcgacgagccctacgacgagcggcggcgg
cggctcgaggacgccctgcccgcctcctccggacgtctgcacgtgcctccggccttcgac
ggcgatctcgaccacgccctcacgtcgagccgggagctgggcctcgagggcgtgatggcg
aagcgccgggccagcacgtacaccgcccgccggacgcgcgactggatcaagctcaagcac
cacctcgcccaggaggtcgtgatcgggggctggcgccccggcaacggacggcgggcgtcg
caggtggggtcgctgctgctcggggtcccggatgcggagggcggcctgcggtacgtcggt
cgtgtcggcacggggttcaccgatcgtcaactcgccgacatcgcggcgaagctcgccccg
ctcgcgcggaagacctcccccttcgtcgacgtgccccgtcccgacgcgcgtgacgcccag
tgggtgacgccgaaactcgtcggagaggtcgagttcgcggagtggacgggcgacgaccgt
ctgcgtcagccgtcctggcgcggctggcgcaccgacaaggaaccctcggacgtcgtccgc
gaggggtga
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