Chitinophaga pinensis: Cpin_6568
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Entry
Cpin_6568 CDS
T00959
Name
(GenBank) RNA polymerase, sigma-24 subunit, ECF subfamily
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
cpi
Chitinophaga pinensis
Pathway
cpi02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
cpi00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Cpin_6568
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpi03021
]
Cpin_6568
Transcription machinery [BR:
cpi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Cpin_6568
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_ECF
Sigma70_r4
GerE
INT_SG_DDX_CT_C
MVP_shoulder
HTH_23
IMS
Motif
Other DBs
NCBI-ProteinID:
ACU63972
UniProt:
A0A979GAZ0
LinkDB
All DBs
Position
complement(8239681..8240298)
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AA seq
205 aa
AA seq
DB search
MKGFRLLLTCREKISTKVVQTPDHATIQILAGRIATGDEQAYRQLFRQFYKPLCQFAASI
VRSNEQAEEIASDVFMNIWKNRERLLQVSNLKVYLYVAARNTALNYLNQQQLQHFSIDEL
SVDLSVADNTPEQLMISGEMARKMADAVNNLPPRCKMIYKLIREDGLKYKEVASILEISV
NTIDVQMAIACKKISESLRLYLPKR
NT seq
618 nt
NT seq
+upstream
nt +downstream
nt
ttgaagggttttcgactacttttaacatgcagagaaaaaatatcaaccaaagtagtgcag
acacctgaccatgccaccatacaaatactcgccggaagaatagccaccggagatgagcag
gcttacaggcaactattcaggcaattttataagcctttatgccagtttgctgcttctatc
gtgcgttctaacgaacaggccgaggaaattgcttccgatgtttttatgaacatctggaag
aacagggagcgccttttacaggtcagcaacctgaaggtgtatttgtatgtggcagcacgt
aatactgcactcaactatctgaaccagcaacagttacaacattttagtatcgatgaattg
tctgtagacctgagcgttgctgataatacacctgaacaactgatgatttcaggcgaaatg
gcccggaagatggccgatgcggtaaataacctgccaccgcgctgtaaaatgatttataaa
ctgatccgtgaagacggtctgaagtacaaagaagtagcaagtatcctggaaatctctgta
aatactatcgatgtacagatggccattgcctgcaaaaagatcagtgaatccctccgttta
tatttacccaaacgctaa
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