Chrysemys picta (western painted turtle): 101937304
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Entry
101937304 CDS
T04662
Symbol
LIG1
Name
(RefSeq) DNA ligase 1 isoform X1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
cpic
Chrysemys picta (western painted turtle)
Pathway
cpic03030
DNA replication
cpic03410
Base excision repair
cpic03420
Nucleotide excision repair
cpic03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cpic00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
101937304 (LIG1)
03410 Base excision repair
101937304 (LIG1)
03420 Nucleotide excision repair
101937304 (LIG1)
03430 Mismatch repair
101937304 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cpic03032
]
101937304 (LIG1)
03400 DNA repair and recombination proteins [BR:
cpic03400
]
101937304 (LIG1)
Enzymes [BR:
cpic01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
101937304 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
101937304 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
101937304 (LIG1)
DNA replication proteins [BR:
cpic03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
101937304 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
101937304 (LIG1)
DNA repair and recombination proteins [BR:
cpic03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
101937304 (LIG1)
NER (nucleotide excision repair)
Other NER factors
101937304 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
101937304 (LIG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
101937304
NCBI-ProteinID:
XP_008173935
LinkDB
All DBs
Position
Unknown
AA seq
948 aa
AA seq
DB search
MQRPITSFFQPMKAVKEEEKIRPPAEEDSTSQVSEAAVPQRNGLSLCVDSPVKSTAKRPL
RRVLESDSDEEEAVLTAQAEVSPIQDKSSEKASSKQEPMQTPQSDLSADSPSPSSSHSAG
DSPALSDSPAIGHAGIPRRRTARKQIPKRKIELPTSRENNRHEEPSAKRCREEQGPGDEA
GRRAKEEDAMEMQEVKGQHSAEVNGASEEGAVNKGEEDHAGGGAQEKPEPPKPSRAISSF
FAPKKVPVAKAGKADERAAVKIPPAPTGSATVSSNGSDGTAGSFSKPAVPLDPVEYNPSK
SSYHPVQDACWGHGQRVPYLAVARTFERIEEVSARLKNIETLSNLFRSVIALSPSDILPC
IYLCLNRLGPAYKGLELGIGETILMKAVAQATGRQLDQIKAEAQEKGDLGLVAESSRSNQ
RTMFTPPKLSAAGVFSKLQEIARMTGSASMNKKIDIIKGLFVACRHSEARYITRSLGGKL
RIGLAEQSVLSAIAHAVSLTPPGQGFPPEVLDAGQGKSAETRKAWLEEQTQILKQTFCEL
PSYDIIVPILLEHGVESLPQHCKITPGIPLKPMLAQPTKGIGEVLKRFEEAAFTCEYKYD
GERAQIHILENGDVHIYSRNQEDNTSKYPDIISRIPKVKKGSVRSCILDAEAVAWDPEKR
QIQPFQVLTTRKRKDVEAAEIKVQVCLYAFDILYLNGESLVKEPFSRRRQLLHESFVETE
GELMFATSMDTCSLDEISEFLDQSIKDSCEGLMVKTLEVDATYEIAKRSHKWLKLKKDYL
EGVGDTLDLVVIGAYLGKGKRVGMYGGFLLACYDEESEEYQSICKIGTGFTEESLEKHYN
FLKDHVLEKPRPYYRWDSSTEPNHWLAAVQVWEVKCADLSISPVHKAAIGLVDEEKGISL
RFPRFLRVRDDKKPEEATTSSQVAELYRQQQQIQNQQPAEKAEEEDFY
NT seq
2847 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgcccgatcacgtcatttttccagcccatgaaggcagtgaaggaggaggagaag
atcagaccgccagcagaagaggactcaaccagccaggtgtcagaggcagctgtgccgcag
agaaatggcctaagcctctgtgtggactccccagtgaaatccactgccaagaggcccctg
cgtcgggtcttggagagcgacagtgacgaggaggaggccgtgctgacagcccaagcagag
gtttctcccatacaggacaaaagctcagagaaagctagcagcaagcaggagcctatgcaa
actcctcagtctgatctctctgcggatagcccctcaccaagcagtagccactccgctgga
gacagcccggccctttctgactcccctgccatcggccatgctggcatccccagacgcagg
accgctcgcaagcagatccccaaacgcaaaatagagttgccaactagcagggagaacaac
aggcatgaggagccgagtgccaagagatgccgggaagagcaaggcccaggagatgaggca
ggcaggagagcaaaggaagaagacgccatggaaatgcaagaggtgaaaggtcagcattcg
gctgaagttaatggcgcttcagaggagggggctgtgaacaagggagaagaggaccacgct
ggagggggagcccaggagaagcctgagccacccaagcccagcagagccatctccagcttc
tttgcccccaagaaggtgccagtggcaaaggcagggaaggcagatgaacgtgcagcagtg
aaaataccacctgccccaactggctcagccacagtgagcagcaatgggagtgatggcaca
gctggcagtttctccaagccagctgtgccactggaccccgtggagtacaatccttcgaag
agcagctatcaccctgtccaggacgcctgctgggggcatggtcagagggtcccctacctg
gctgtggctcggacatttgagcggatcgaggaggtgtctgcccggctgaagaacattgag
accctgagcaacctcttccgctcagtgatcgccctgtcaccatctgacattctgccctgc
atctacctctgtctgaaccgcctgggccctgcctacaaggggctggagctgggcatcggc
gagaccattctcatgaaggctgttgcacaggcaacaggacgccagctggatcagatcaaa
gccgaggcccaggagaagggggatctgggcttggtagctgagagcagccgcagcaaccag
cgcaccatgttcacgccacccaagctgagtgctgccggagtcttcagcaagctacaagag
attgccaggatgacaggcagtgcttccatgaacaagaagatcgacatcatcaaagggctg
tttgtggcctgccggcactcggaagctcgctacatcactcggtccctgggcgggaagctt
cggattgggctggcagagcagtcagtgctgtcagccattgcccatgccgtgtctcttact
cccccaggacaagggtttcccccagaggtgctggatgctggccagggcaaatctgcagag
acacgcaaagcctggctggaggagcagacccagatcctcaagcagaccttctgtgagttg
cctagctatgacatcatagttcccatcctgctggagcatggagtggagagcctgccacag
cactgcaagatcaccccagggatcccgctgaagcccatgctggcccagcccaccaagggc
attggggaggtgctgaagcgctttgaggaggctgccttcacctgcgagtacaagtatgat
ggggagcgagcccagatccacatcctggagaatggggatgtgcacatctacagccgcaac
caggaggacaacacctccaaataccctgacatcatcagtcgcatccccaaggtgaagaag
ggcagcgtgcggtcatgtatcctggatgctgaggccgtggcctgggaccccgagaagagg
cagattcaacccttccaggtcctgaccacgcggaaacgcaaggatgtggaagctgctgag
atcaaagtgcaggtgtgtctgtatgccttcgacattctgtacctcaatggggagtcccta
gtgaaggagccattctccaggcgccgtcagctgctgcatgagtcttttgtggagacagag
ggggagttaatgtttgccacctccatggacacctgcagcctggacgagatctctgaattt
cttgaccagtccattaaagactcctgcgagggactcatggtcaagaccctggaggtggat
gccacgtacgagatcgctaagagatcccacaagtggctgaagctgaagaaggattacctg
gaaggtgttggtgacactctggacttggtggtgattggtgcctatctgggcaagggcaag
cgagtaggcatgtatggcggcttcctgttggcctgctatgatgaggagagtgaggagtac
cagagcatctgcaagattgggactggcttcacagaagagagcctggagaagcattacaac
ttcctgaaggaccatgtgctagagaagccacggccctattaccgctgggacagcagcact
gagcccaaccactggctggcagctgtgcaggtgtgggaagtgaagtgtgctgacctgtcc
atctcgcctgtgcacaaggcagctataggcctggtggatgaggagaagggcatctccctg
cgctttccccggttcctgcgcgtgcgtgatgataagaagcctgaggaagccaccaccagt
tcccaggtggctgagctctacaggcagcagcagcagattcagaaccagcagcctgcagag
aaagctgaggaggaggacttctactag
DBGET
integrated database retrieval system
