Chrysemys picta (western painted turtle): 101937566
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Entry
101937566 CDS
T04662
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X2
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
cpic
Chrysemys picta (western painted turtle)
Pathway
cpic03013
Nucleocytoplasmic transport
cpic03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cpic00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
101937566 (UPF1)
03015 mRNA surveillance pathway
101937566 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpic03019
]
101937566 (UPF1)
Enzymes [BR:
cpic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
101937566 (UPF1)
5.6.2.5 RNA 5'-3' helicase
101937566 (UPF1)
Messenger RNA biogenesis [BR:
cpic03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
101937566 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
101937566 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
DEAD
Helicase_RecD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
101937566
NCBI-ProteinID:
XP_005279035
LinkDB
All DBs
Position
Unknown
AA seq
1110 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGPGHGGPGPGQG
PPGPIEAQVNGPDGILQNGAVDDNVAKTSQLLAELNFEEDEEDTYYTKDLPVHACSYCGI
HDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGC
RNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSE
QEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGP
LVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKG
DLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQSALK
TFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLS
LIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKS
REAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLM
NADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGP
VVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAA
DRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPD
QIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQ
GIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRE
SLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNMYFQTHDQIGM
ISAGPSHVTAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGTPKGKAGRGGRQKNRFGIP
GTSHSNLPNSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFK
SQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3333 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacggccccagctcgcagacgctcaccttcctggacaccgaggag
gccgagctgctcggcgccgacacgcagggctccgagttcgagttcaccgacttcaccctc
cccagccagacccagaccccgcccgggcccggacacggggggccgggcccggggcagggg
ccgcccggaccgatcgaggcacaggttaatggtcctgatgggatactccaaaatggtgca
gtggatgataatgtagctaaaaccagtcaactgcttgcagaattaaactttgaagaagat
gaagaagatacctattacaccaaggatcttcctgtgcacgcttgcagttactgtggtatc
catgacccagcttgtgtggtttactgcaataccagcaagaagtggttctgtaatgggcgt
ggaaatacatctggcagccacattgtaaatcatctcgtgagggcaaagtgtaaagaggta
actcttcacaaagatggtcctttgggggagacggtcttggagtgttataattgtggctgt
cgtaatgtgttcctccttggcttcattcctgctaaggctgactcggtagtcgtattactg
tgcaggcagccgtgtgccagtcagagcagtttaaaggatattaattgggacagctcacag
tggcaacctcttatccaagaccgctgtttcctttcctggctggtaaagattccttctgaa
caggagcagttgagagcacgtcagattacagctcaacaaattaacaaactggaagaactc
tggaaggaaaatccatctgcaacccttgaagacttggaaaaacctggtgttgatgaagaa
ccgcagcatgtcttacttagatatgaggatgcttatcaataccaaaatatttttggacct
ctagtcaagcttgaagcagattacgacaagaaactcaaggagtcccagacccaagataac
atcacagtgagatgggacctgggcttgaacaagaagagaattgcttacttcactttgcca
aagactgactcagatatgcgtcttatgcagggagacgaaatctgcctgagatataaagga
gacctggcccctttgtggaaaggaattggtcatgttattaaagttcctgataattatggt
gatgagatagctattgagctgaggagcagtgttggagcacctgtggaggttactcataac
ttccaagtggattttgtgtggaagtccacttcatttgacagaatgcagagtgctttaaaa
acatttgctgtggatgaaacttcagtgtctggctacatctaccacaaactgttaggtcat
gaggtagaagatgtgattattaaatgccagctgccaaagcgttttacagcgcaaggactt
cctgacctcaatcattctcaggtttatgctgtaaagactgtcttgcagcgtcctctgagc
cttatccaaggtccccctggtacaggaaaaactgtgacatcagccactattgtctaccat
ttagctaggcagggcaatgggcctgtgttagtttgtgccccaagtaacatagctgtggat
cagctcactgagaagatccatcagacagggctaaaagtcgttcgtctgtgtgctaaaagc
cgcgaggcaattgattctccggtatctttcctggcattgcacaaccagatcagaaacatg
gatagtatgcctgagctccagaaactgcagcagctgaaagatgaaactggagaattgtca
tctgctgatgagaaacgctatcgtgcactgaaacgaacagcagagcgtgaattacttatg
aatgcagatgttatttgctgcacatgtgtgggagcaggtgacccaagacttgcaaaaatg
cagtttcgttccattttaatagatgaaagcacacaggctactgaaccagaatgtatggtg
ccagttgttctgggagccaaacagctgatccttgttggtgatcactgccagcttggtcct
gtcgtgatgtgtaaaaaagcagcgaaggcaggcctgtctcagtccctttttgagaggctt
gtggtgttgggtatccgtccaattcgcctgcaagtgcagtatcgtatgcaccctgcactt
agtgcttttccatccaacatcttctatgaggggtcactccagaatggtgttactgcagcg
gaccgtgtgaaaaagggctttgatttccagtggccccagccagataagccaatgtttttc
tatgtgacacagggtcaagaagaaattgccagttcaggcacctcttacttaaacaggacg
gaagctgctaacgtggaaaagataactacaaagttattgaaagctggtgccaagcctgat
cagattggcattataactccttatgagggccagcgctcttacctggtacagtacatgcag
ttcagtggttccttgcatacaaaactctatcaggaagtggaaatcgcaagtgttgatgct
ttccaaggacgagagaaggactttattatcctttcttgtgtaagagccaatgagcaccaa
ggaattggatttttaaatgatcctagacgtcttaatgtggctctcaccagagcaagatat
ggagtaattattgttgggaacccaaaagctctgtctaaacaaccactttggaatcacctg
ctgaactactacaaggagcagaaggtactggtagagggaccactaaacaatctccgagaa
agccttatgcagttcagcaagccccgtaaacttgtcaacaccatcaacccaggtgcccgt
ttcatgactactgccatgtatgatgcacgtgaagctattatcccaggatctgtttatgac
cggagcagtcaaggacgcccatcgaacatgtacttccaaacacatgatcaaattggaatg
attagtgctggacccagccacgtcactgctatgaacattcctatccctttcaaccttgtg
atgccaccaatgccaccaccaggatattttgggcaggctaatggaccggccgcaggacgt
gggacacctaaaggaaaggctggtcgtggtgggcgccagaaaaatcgttttgggattcct
ggaactagccactcaaaccttccaaacagtcaagcgagccaagatgtggtgtcccagcca
ttctcccagggtccactgactcagggttatatctccatgagtcagccatcacagatgagc
cagccaggactctcccagccagaattatcacaggacagttaccttggtgatgagtttaaa
tctcagattgatgtggcgctgtcgcaggactctacttaccagggtgaacgtgcatatcaa
catggtggagtgacaggactgtcacagtattag
DBGET
integrated database retrieval system
