Chrysemys picta (western painted turtle): 101939412
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Entry
101939412 CDS
T04662
Symbol
DDX60
Name
(RefSeq) probable ATP-dependent RNA helicase DDX60 isoform X1
KO
K20103
ATP-dependent RNA helicase DDX60 [EC:
5.6.2.7
]
Organism
cpic
Chrysemys picta (western painted turtle)
Brite
KEGG Orthology (KO) [BR:
cpic00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpic03019
]
101939412 (DDX60)
Enzymes [BR:
cpic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
101939412 (DDX60)
Messenger RNA biogenesis [BR:
cpic03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
101939412 (DDX60)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
ResIII
Helicase_C
Cytochrom_B_C
Motif
Other DBs
NCBI-GeneID:
101939412
NCBI-ProteinID:
XP_005309799
LinkDB
All DBs
Position
Unknown
AA seq
1775 aa
AA seq
DB search
MASGGTVKDGSDDDGGDLTAQNLEKKSVSFEDKVENKSGCIDFSNVFCWEKEIQQVSRVS
DYSRQDNYDFRNPELNKHIGLLEKISDLILNDIPKAEYVSLLNDYVESEFFLIDGDSLFI
TCISEQTLLPGQNLHFFYLVERFLLDLSNKGAKYVIVFFKDAEHAYFRHPTLLSLRTALI
LHLQHNTDAVIHTEFSNFLEEKWQSFLQESYPYFIIISDDGLTKLQTSFLNLFIIHALSK
RINIVLTSGQESDFIRVYGYHIHGMYKHKGFFSQHRKEIQCVFQTLVKDLQESSTATLLS
LSGHSSVKDMEKEVCETLSQFKHIWPEISDVRHIVCIVSCALGLRMYSRLQKKHQATIRK
QEKSREITPEEAEDLIRMYCLSVVFLFHLPLSQRARVRSISYHWSKQTFTFIQMHKGCEF
FLLKHLTTEKLWKVDFTHLPDLSDDLLWKNVAYYYEVENEQGLNLDMGEKIKREYEYLWS
IISKLSGKDDDGKSLPLRRTSISFLEKRASPTEESKNIPNLGLIPMTSMVVDEFAGDILS
SLPFLKSDDSAVTSLIKQKEFDEIRHWHSGKLLSDDYDRTKSSSQAMCKDPRALRSNQKL
QSFLRFYGSSLEGNISKTIVTQLDTPKKAYSDMKNSKKIHKTKAEIIIEENQKRMKAEEE
RKEQKQWDALSIEKLIQENFNLGIRKLEDFLKKCQSNSVKCTAEMAGLNTCFEVWIEQCK
DQGKRLKDINAAVEVMRRIHSLLEKYKDLMEKTDYQKIVRCLRYFGFDNLACTLESSQIP
EDDRKEMKAKISKYAVGMGAARFQLQYMGHCLLREERTDRDPRIQHFIPDTWQRDLLDIV
DNNESAVIVAPTSSGKTYASYYCMEKILKESNEGVVVYVAPTKALVNQVWATVYNRFNKT
LPDGMVVCGVFTRDFRHDALNCQVLVTVPQCLEILLLSPRRQQWVKRIRYVIFDEVHCLG
GEIGAEVWEHLLVMIRCPFLALSATISNPKHLTEWLQSVKRYWQHVESVREESLRSSTTP
KKGTKKQKNIKTVNKSYKVKLVLYGERYNDLEKYVCSLEDNDFKIHHFHPCAALTVDHID
KYGFPSDLAFSPRESILLYDSMVQVWENWPRADELDPEKFTHFKNKIVITKADARKYEEE
LKEELKNWIVHDNRMKANRVLKLLKPQPPYCSEKDMKDNFPCFVEKLRQMDKLPALFFLF
DIKKVEKWAENIKNCLEKKQKSKQIPKTEKQIHLLTNRLKKKEKSMQKNQTVGMKITSSK
TDKMILEEAEHGNLMEKLGKLTEIPPDCTYANSQAVDTEILQKVMDRVKFMKTNTTLKTL
ALRGIGYHHASVEQRGRQLVEMLFRMGFIQVVTATGTLALGINMPCKSVVFTQNSVYLDA
LNYRQMSGRAGRRGQDLLGNVFFYDIPLPKVDKLIKSNVPQLRGQFPLNISLALRLMLLA
AKADDKEDAKAKVLSLLKHSLLSFNQPRVVEILKLYFLFSLQFLVKEGYLDQEGNTMGFA
GLVTHLHYHEPSNLVLVSFLVKGLFHKLCQPRKDSKTFSKEVMEQLVLVLANLFGRRYIP
ASVIKSKQNFYQSKVFLEDLPEDFAVALHEFNNKIEENFGHFLLIISKMADMKQEYQLPL
SRIDFSSEECNDSKLVSHLMSCNEGRTAVSPFACLSGNVDSDLLHAETVNSVILRTVGIT
AGNIPVLCAKKFDNRRRRMPLNAYALDFYKHGSLTAMAQDNGIHEGEAYLLLKDFSLTIK
AISVSLSELCDDEEDNVVQAFSQLSDSYWEKLQKV
NT seq
5328 nt
NT seq
+upstream
nt +downstream
nt
atggcttctggaggaactgttaaagatggcagtgatgatgatggtggagatctcacagcc
caaaaccttgaaaaaaaatctgtgtcttttgaagataaagtagaaaataaaagtggctgc
attgacttttcaaatgtattttgttgggaaaaggagatacagcaggtatcaagggtcagt
gattatagcagacaagacaactatgatttcagaaatccagaactaaacaaacacatagga
cttctggagaaaatatctgacttaattttgaacgacataccaaaagctgagtatgtcagc
ttactcaatgattacgttgagtctgagttttttctgattgatggagattcattgttcatc
acttgcataagtgaacagacattactgccgggacagaacctgcacttcttttacctggta
gaacgctttctactggatttatcaaacaaaggagcaaaatacgtcattgttttcttcaag
gatgcagagcatgcatatttcaggcatccgactctcctgtccttacgtactgcactgatt
ctccatcttcagcacaatactgatgctgtcattcacactgaattttccaactttttagaa
gagaagtggcaatctttcctgcaagaaagctacccatattttataataatctctgatgat
ggactgactaaactacagacaagctttctcaatttatttatcattcatgccttgtcaaaa
agaatcaacattgtccttacttctggacaagaatcagattttatcagagtttatggatat
cacatccatggcatgtacaagcacaagggctttttctctcagcaccgaaaagagattcag
tgtgttttccaaacactggttaaagacttgcaggaatccagtacagcaacattactttct
ctctctggacattcaagtgtgaaggacatggaaaaagaggtttgtgagacattatcccag
ttcaagcatatttggccagaaatatctgatgttcgacacattgtctgcattgtctcatgt
gcattggggctgagaatgtacagtaggttacaaaagaaacaccaggctaccattcgaaaa
caggagaagagtagggaaataacaccagaagaagcagaagacctaatcaggatgtattgc
ctgagtgtggtttttcttttccatttacctctttcacaacgagctcgggttagatcaatc
agttatcattggagtaaacaaactttcacatttatacaaatgcataaaggttgcgaattt
tttcttctgaaacatctgacaactgaaaagctgtggaaagtggatttcactcatttgcct
gatttaagtgatgatcttttgtggaagaatgttgcatattactatgaagtagaaaatgag
caagggttaaacttggatatgggggaaaaaattaagagagagtatgaatatctgtggagt
atcatatcaaaactatctggaaaggatgatgatggaaagtctttgcctctgagaagaact
tctatatcttttcttgaaaagagagcttcaccaactgaagaatccaagaatattcctaat
ctagggctgatacccatgacatctatggtggtggatgaatttgctggagatattttaagt
agcctaccatttttaaaaagtgatgactctgctgttacttcccttattaaacaaaaagaa
tttgatgaaattcgacactggcattcaggaaagcttctcagtgatgattatgacagaaca
aagtccagttctcaagcaatgtgcaaagatccaagggcccttcgaagcaatcaaaagttg
cagtcttttctacgcttttatggatcatcactggaaggcaacatttcaaaaacaattgta
acccaattggatactccaaagaaggcttattctgacatgaagaacagcaaaaaaattcat
aagactaaagcagaaataattattgaggaaaaccaaaagagaatgaaagctgaagaggaa
agaaaagaacagaaacaatgggatgcgctttccattgaaaagctaatacaagagaatttt
aacttgggaataagaaaactagaggattttctcaagaagtgtcaaagtaattctgtgaaa
tgtactgcagaaatggcaggactgaatacttgctttgaagtgtggatagaacaatgcaaa
gaccaaggaaagagactgaaagatataaatgcagctgttgaagtaatgagaagaatccat
tccttgctggaaaaatataaagatttaatggagaagacagattatcaaaagattgtcaga
tgtcttagatactttggatttgacaatttagcatgtactttagaatcttcccagattcca
gaggatgacagaaaagagatgaaggcaaagatttctaaatatgctgttggcatgggagca
gctcggtttcagctacagtacatgggtcattgcctgttacgagaagagagaacagatcga
gatcccaggatccagcattttattccagatacatggcagcgagaccttcttgacattgta
gataataatgaatctgcagtgattgtagcccctacctcatcagggaaaacatatgcctcc
tactactgcatggagaaaatcctgaaagaaagtaacgagggggtggttgtgtatgttgct
ccaacaaaggctcttgttaaccaagtgtgggcgactgtttataatcgatttaacaaaaca
ctgcccgatggtatggtagtatgtggtgttttcacgagagatttccgccatgatgctctg
aactgtcaggtactagtgacggtgcctcaatgcttagaaatcctgctgctgtcacctcgc
cgccagcaatgggtcaaaaggatcagatatgttatatttgatgaggtccattgtcttggt
ggtgaaattggagcagaagtttgggagcaccttctagttatgattcgatgtccatttttg
gctctctctgcaactattagtaacccaaaacatcttactgagtggctacagtcagtaaag
aggtactggcaacatgttgaaagtgtaagagaagaaagccttagatcttctacaactccc
aagaaaggaactaaaaaacaaaagaatatcaagacagtaaataaatcatataaagttaaa
ttggtgctttatggagagagatacaatgatttggaaaaatatgtgtgttccctagaggac
aatgacttcaaaattcatcactttcacccatgtgctgccctaactgtggaccatatagat
aaatatggcttcccttcagacctggctttttctccacgagaaagtattttactgtatgac
tccatggtacaagtctgggaaaactggccaagagctgacgagctagatcctgagaagttt
acacattttaaaaataaaatagtaatcacaaaagcagatgcaagaaaatatgaagaagaa
ttgaaggaagagctaaaaaattggattgtacatgacaacagaatgaaggctaacagggtg
ctgaagttactcaaaccccaacctccctattgttcagaaaaagacatgaaggacaatttc
ccatgttttgttgaaaaactaagacagatggataaactgcctgcattattttttctattc
gacattaaaaaggtggaaaaatgggctgaaaatataaaaaactgcctggagaagaagcaa
aagagtaaacaaataccaaagactgaaaagcaaatacatttgctaacaaatagattgaaa
aaaaaggaaaagtccatgcagaagaatcagactgttggcatgaaaattacatcaagtaaa
actgataaaatgatacttgaggaggctgagcatggaaatttgatggaaaaacttgggaag
ctaactgaaatccctccggattgcacctatgcaaatagccaagctgttgatacagagatt
ttgcagaaggtgatggatcgagtgaagttcatgaaaacaaatacaacactgaaaacactg
gcactgagaggaattggatatcatcatgcttctgtggaacaaagaggaagacagttggtg
gagatgctcttcaggatgggatttatccaggtggttacagctactggaacactggcttta
ggaatcaacatgccatgtaaatcggttgtcttcacacagaattctgtgtatttggatgct
ctgaactatagacagatgtccggacgtgctggacgacgtggtcaagacttgctgggaaat
gtgtttttctatgatattccattgccaaaagtagacaagcttataaaatccaatgtacct
caactgagaggccagttccctctgaatatttctctggcactgagacttatgctgttggct
gcaaaagctgatgacaaagaagatgcaaaagcaaaggttttgtcactgttgaagcattca
cttctctccttcaaccagccaagagtcgtggagatattaaagctgtactttttattttct
ttgcaatttcttgtcaaggagggatatttggatcaagaaggtaataccatgggatttgct
ggacttgtaacccatctgcattatcacgaaccttccaatcttgtcttagtcagctttctt
gtgaagggcttgttccacaaactgtgccagccgaggaaagactcaaagacattttctaaa
gaggtgatggaacaactagtgctagtactggcaaatctgtttggaagaagatatatccca
gccagcgtgattaaatctaaacaaaatttttaccagtcaaaggtgttccttgaagatctc
ccagaagactttgctgttgcattacatgagttcaacaacaaaatagaggagaattttggc
cattttttattgattatttccaagatggctgatatgaaacaagaataccaacttcctctt
tcaaggattgatttttcaagtgaagaatgcaatgactctaaactggtgtctcacttgatg
agttgtaatgaaggaagaactgctgtttcaccttttgcatgcctgtctggaaacgtggat
agtgatttacttcatgcagagactgtcaacagtgtcatattacgcacagttggtattact
gctggaaatattcctgtactttgtgcaaagaaatttgataatcgaagaagaagaatgcca
cttaatgcttatgcacttgacttctataaacatggttctttgacagcaatggcacaagat
aatggtatacatgaaggagaagcttatcttctgctgaaagatttttcactcactattaaa
gctatcagcgtttctctaagtgaactctgtgatgatgaggaggacaacgttgtgcaggca
tttagccaactcagtgacagttactgggaaaaactgcaaaaagtctaa
DBGET
integrated database retrieval system
