Culex pipiens pallens (Northern house mosquito): 120429018
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Entry
120429018 CDS
T07310
Name
(RefSeq) DNA ligase 4-like
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
cpii
Culex pipiens pallens (Northern house mosquito)
Pathway
cpii03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cpii00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
120429018
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cpii03400
]
120429018
Enzymes [BR:
cpii01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
120429018
DNA repair and recombination proteins [BR:
cpii03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
120429018
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
RNA_ligase
DNA_ligase_A_C
BRCT
BRCT_2
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
120429018
NCBI-ProteinID:
XP_039450093
LinkDB
All DBs
Position
1:complement(25212708..25220424)
Genome browser
AA seq
925 aa
AA seq
DB search
MSKVDCISQRVKFSEISSILEKVKAASGAKRDELLRRYFASFEQFRREFQRENPGQARSS
IFPVLRLLLPGADRERDSYGVRVKSLRDLYIKVLGISESSTEARKLSGYDEETGGGGASS
SEDFADRVFRLMQGRCPPEGSLTVWEVNERLDAIGGHYVNGERRRIGEELERLVGGMSQV
DQKWLIRILLKNLRLGMSLGKILGVYHAKAGQLYDRFSNLSKVCEVVESGEGWEELGEGG
GSVELFHPVKPMLCQRVDLKLVDGMLKRDEYWLETKMDGERFQIHKDGVVFKYFSRNSYE
YSHVFGENRNQVGSTLTPFLADLLASNVQSVILDGEMMVFDKVALIYRDKSENTDVKAVK
SDNPTLRPCFCVYDVLFLNGKSMIAVPYAERIRLLGTLVKPKVGVLTTCKRVKLESSEHL
VELLNQAIDTHQEGVVIKKQDSTYSPNERNAGWYKIKPDYIDNLVSDFDLLIMGGFYNAK
RSFINTFLVGVLDKSTEDTFLAVTKVGIGLSVDQWRTLNTSLRPHWREVTFRREGRSKTS
EEPPGLRWGQTAPDVWIPPNHSIVLQLKGSELVRSSSFATSYTIRFPRITAIRSDKDFKD
VCTGEEFARLCSANTTVAKLAKRHVTAADLLPPSGSTSRKRKQISPLKSRRRSEPEQDAP
PPLDDICSGLDFCVLSTAKGAPSIRELETTIRRHGGRTVKNPGPKTYAVIAGERTFLVSR
VIETRRHNVATVEWVLRTLGGPQPRTNLPEFTPNDLLAATDELREQLAERFDRFGDSLTA
PIANPDEMRALLKQMTVAESLSARELRNGQREILGVGSSLRMFRGLVARLYEGNLKGEDG
DVARYRARFGMLKFVRNGGRWVGEEEEDAGGTHVFVVENEGLDRERLREWVDGRGFGKGK
VVRLEWIQASLGGKRLCEEQLYSII
NT seq
2778 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaggtggactgcatttcgcagcgggttaaattcagcgaaattagctcgattctg
gaaaaggtcaaagctgcctccggcgccaagcgggacgagctgctgcggagatactttgct
tcgtttgagcagttccggcgcgagtttcaacgggaaaatcctggccaagcgcgttccagc
atcttcccggtgctgcgtctcctcctgccgggcgcggaccgcgagcgggactcgtacggc
gtgcgggttaaatcgctacgggacctgtacatcaaggtgctcggcatcagcgagtccagt
acggaggcgcgcaagctgtccggctatgacgaggagacggggggtggcggcgcttcgtcg
tcggaggactttgccgatcgggtgttccggctgatgcagggccggtgtccgccggagggc
agtttgacggtgtgggaggttaacgagcggttggacgcgattggggggcattatgtgaat
ggggagaggagacggattggggaggagttggagcggttggttggggggatgagtcaggtt
gaccagaagtggttgatacggatattgctgaagaatttgaggcttgggatgagtctgggg
aagattttgggggtttatcatgcgaaggcgggtcagttgtacgataggtttagtaatttg
agtaaggtttgcgaggtggttgagagtggcgaggggtgggaggagttgggcgagggtggt
gggagtgtggagttgtttcatccggtaaagccgatgctttgtcagcgggtggatttgaag
ctggtggacgggatgctgaagcgggacgagtattggctggagactaagatggacggggag
cggttccagatccacaaggacggagtggtgtttaagtacttttcccggaacagttacgag
tacagtcacgtgtttggtgagaaccggaaccaggttgggtcgacgttgaccccttttttg
gcggatttgttggcttcgaatgtgcagagcgtgattctggacggggagatgatggtcttt
gacaaggttgctttgatctaccgggataagagtgaaaacacagatgtgaaggctgtcaag
tcggacaatccgacgttgagaccttgcttctgcgtttacgacgtgctgtttctgaacgga
aagagcatgattgctgttccgtacgcggaacgtatccgtcttctgggaacgttggtgaag
cccaaggtcggcgttttgacgacctgcaagcgggtcaaattggagagtagcgaacacctg
gtggaactcctgaaccaagctatcgacacccaccaggaaggagtggtcatcaagaagcag
gactcgacctactctccgaacgaacgcaacgccggatggtacaagatcaagccggactac
atcgacaacctggtatcggactttgacctgctgatcatgggcggcttctacaacgcgaag
cgaagcttcatcaacacgtttctcgtcggagttctggacaagtccacagaagacaccttt
ctggccgtcaccaaggtcggcatcggcctctccgtggaccagtggcgaaccctgaacacc
tcgctgcgaccccactggcgcgaggtcaccttccgccgggaaggtcgctccaagacctcc
gaggaaccgccgggacttcgctggggccaaaccgctccggacgtgtggatccctccgaac
cactccatcgtactccagctgaaaggttccgaactggtccgcagctcgtccttcgcgacc
tcctacacgatccgcttccctcggataaccgcgatccgcagcgacaaggacttcaaggac
gtctgcaccggcgaggagtttgcccgactctgctccgccaacacgaccgtggccaagctg
gccaaacggcacgtcacggcggcggacctgctccccccatccggctcaacctcccgcaag
cgaaagcaaatctcccccctaaaatcgcgacgacgatccgaaccggaacaagacgcccct
ccccccctcgacgacatctgctccgggctggacttttgcgtgctcagcaccgccaaaggc
gccccctcaatccgcgaactcgagacaaccatccgccgccacggcggtcgtaccgtcaag
aatccgggccccaaaacgtacgccgtgatcgccggcgagcgcaccttcctcgtgtcccgc
gtcatcgaaacgcgccgccacaacgtggccaccgtagagtgggtgctccgcaccctgggc
ggcccccaaccccgcaccaaccttcccgagtttaccccgaacgacctgctggcggcgacg
gacgagctgcgcgagcaactggcggaacgattcgaccggttcggggactcgttgacggca
ccaatagccaatccggacgagatgcgtgccctgctgaagcagatgacggtggcggagagt
ttgagtgcgcgcgagttacgaaacgggcagcgggagattttgggcgtggggtcgtcgctt
cggatgttccgggggcttgtggcgagactgtacgagggcaatctgaagggggaggacggc
gacgtggcgcggtacagggcccggtttgggatgttgaagtttgtgaggaatggtggcagg
tgggtgggcgaggaagaggaggacgctggagggacgcacgtgtttgtggtggagaatgaa
gggttggatagggagcggttgagggagtgggttgatggtcgggggtttgggaagggcaaa
gtggtgcggttagagtggatacaggcgagtttaggtgggaaacggttgtgtgaagaacaa
ttgtatagtattatttga
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