Chryseobacterium piperi: CJF12_12860
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Entry
CJF12_12860 CDS
T05071
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cpip
Chryseobacterium piperi
Pathway
cpip03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cpip00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CJF12_12860 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cpip03400
]
CJF12_12860 (mfd)
Enzymes [BR:
cpip01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CJF12_12860 (mfd)
DNA repair and recombination proteins [BR:
cpip03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CJF12_12860 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
UB2H
Latarcin
Choline_kin_N
SBP_bac_3
PPARgamma_N
Motif
Other DBs
NCBI-ProteinID:
ASW75083
UniProt:
A0A086BMX3
LinkDB
All DBs
Position
complement(2921083..2924445)
Genome browser
AA seq
1120 aa
AA seq
DB search
MQLKAINEKFLPDLLQKEFGKEIFTQLEAHQHISVKGNAGSSSSVFVAELFLTQKKNILY
LIDDKEEALYANTEIEDLLGKDKVLFFPATHLEPYQVEKTQNANLVLRTEVLNKLNSSKS
PKVIVAYAGALSEKVLKKEDFKAISHHIKVGDQLDFDFVDELLSHYQFQQADFVSEPGEF
SVRGGIVDVFSYSYEKPYRITFFGNEVESIKTFDIETQLSIDKIKEFQLVSNMNFSVSAS
RVSLLQLLPKESFVVSKNAVVGLQKIKSFYEKALEKYETLSKDIAHRTPQELFISDQEFL
FDYKKFKTIDFSSVGIEELETFNITIEQTAQPSFHKNFELLIQDLEEKQSEGFDTWISFS
TEKQKERLESIFEELEHEAFFKSFKSELHEGFVDYNHKLLVYTDHQIFDRYQRYKAKNTF
AKSEQLTLKDLMSLKVGDYIAHIDHGIGKFMGLVKVNNDGKIQECFKLTYKNGDLLYVSI
HSLHKISKYNGPDGKEIVLSKLGSPAWKSLKQKTKAKVKQIAFDLIKLYAQRKTAQGFAF
TPDSYLQNELEASFIYEDTPDQEKATIDVKKDMESSTVMDRLVCGDVGFGKTEVAIRAAF
KAATDGKQVAVLVPTTILAFQHYRSFKERLKDFPVNVSYVNRFRTAKQKSEALEGLKNGK
VDIIIGTHQLASASVKFKDLGLLIIDEEHKFGVSVKDKLKTLKSNVDTLTLTATPIPRTL
QFSLMAARDLSVIKTPPPNRQPVDTQIVGFNEEIIRDAVSYELQRDGQVYFINNRIENLK
DIAGLIQRLVPDARVITGHGQMEGKQLEKNVLDFMEGKYDVLVSTTIVESGVDVPNANTI
FINDAQRFGMADLHQMRGRVGRSNRKAFCYLITPPYDMMTSDARKRLEAIEQFSDLGSGF
QIAMKDLEIRGAGDLLGAEQSGFINEMGFETYQKLMQEALEELKDDEDFENLFDNEEDRQ
KLFKSVKDVNIDTDLELMLPDFYISNTEERLSLYQKIAEIDNEKDLQKFENELIDRFGDL
PKEAVNLLKSVSLKWLAADIGFEKIVMKNGVFLGYFPSNPQDKFYQTDKFKHIISYLTQN
PSEAQLKEKIGKEGNNLMMRKDKVKNVDEVNLLLKSILAL
NT seq
3363 nt
NT seq
+upstream
nt +downstream
nt
atgcagttaaaagccattaatgaaaagtttcttccagatttgttgcaaaaagaatttggt
aaagaaattttcacccagttagaagctcatcagcatatttccgttaaaggaaatgcaggg
tcttcctcttctgtttttgtagcggaacttttcctgacacagaaaaagaatatcctttat
ttaattgatgataaagaagaagccctatatgctaatacggaaatagaagatttattggga
aaagacaaagttctattctttcctgcaactcatcttgagccgtatcaggttgaaaaaaca
cagaatgcaaatcttgtcctgaggacagaggttttaaataaacttaactctagcaaatct
ccgaaagtgatcgttgcctatgccggggcattatctgaaaaagttttaaagaaagaggat
tttaaggccatctctcatcatattaaggtgggggatcaattggatttcgattttgtggac
gaattgctttcacattatcagtttcagcaagcggatttcgtatcagagccgggagaattt
tctgtacggggtgggattgtagatgttttttcttattcttatgagaaaccctacagaatt
actttctttggaaacgaagtagaaagcattaaaacttttgatattgaaacacagctttct
attgataaaataaaagaatttcagttggtttccaatatgaacttttcggtttcagcgagt
agggtttccttgctgcagcttttgcctaaagaaagttttgttgtctctaaaaatgcagtt
gtaggacttcagaaaatcaaatcattttacgagaaagcactggaaaaatatgaaactctg
agtaaagatattgcacatagaaccccgcaggaactgtttatttctgatcaggaattttta
ttcgattataaaaaatttaaaacaatcgatttcagcagtgtcggaatagaagagctcgaa
acatttaatattaccatagagcaaactgctcaaccatcttttcataagaattttgaatta
ttaattcaggatcttgaagaaaaacaaagtgaaggctttgatacctggatttctttttcg
acggaaaagcaaaaagaaaggctggaatccatttttgaagaattggaacatgaggctttt
ttcaaaagctttaagtcggaactgcacgagggatttgtagactataatcataaactttta
gtatatacggatcaccagatttttgaccggtatcagagatataaagccaaaaatactttt
gcaaaatctgaacaactgaccctgaaagacctaatgtctctgaaagtaggggattatatt
gctcacatcgaccatggaataggaaaatttatgggattggtgaaagtgaataatgatggg
aaaatccaggaatgttttaaactgacttataaaaatggagatctgttgtatgtaagtatt
cattcactgcataaaatatccaagtataacgggccggatggaaaagagattgttctgagt
aagctgggttcaccggcatggaaatccttgaagcagaaaacaaaagcaaaggtaaaacag
attgcttttgacctgatcaaattatatgctcaaagaaaaacagcacaaggctttgctttt
actccggattcttatttgcaaaatgagctggaggcaagtttcatttatgaagatactcca
gatcaggaaaaagcaacgattgacgtgaaaaaggatatggaatccagtaccgtaatggac
cgattggtttgcggtgatgtggggttcggtaaaacagaggttgctattcgggcggcattc
aaagccgcgactgacggtaaacaagtagctgttctggttccgactactattcttgcattt
cagcactacagaagtttcaaagaaagactaaaggatttcccagttaatgtatcttatgta
aataggttcagaacagcaaaacaaaaatctgaagctttagagggcttgaaaaatggaaag
gtagatattattataggaacacatcagctggctagcgccagtgtgaaatttaaagattta
ggtttactgattattgatgaagaacataaattcggagtttctgtaaaagataaattaaaa
acccttaaaagtaatgtagatacactgactttaacagcgacgccaattccgagaactttg
cagttttctttaatggcggcaagggatctttcggttataaaaacaccacctcccaacagg
cagcctgttgatacacagattgtaggattcaatgaagagattattcgtgatgctgtatcc
tatgaactacagagggatgggcaagtttatttcattaataacaggatagaaaacctgaaa
gatattgccgggctgattcagagattagttcctgatgcaagggtgattaccgggcatggt
cagatggaagggaagcagctggagaaaaatgtacttgactttatggagggtaaatatgat
gttctggtttctacgacaattgttgaaagtggtgttgatgttcctaatgcgaataccatt
tttattaatgatgcccagagatttgggatggcagatcttcaccagatgagagggagagta
ggacgaagcaatagaaaagctttttgttatctgatcacaccaccttatgatatgatgact
tctgatgcaagaaaaagattggaagctattgagcagttttcagatttaggaagtggtttt
caaattgccatgaaagatcttgagatccgcggagcaggtgacttgctaggagcggaacaa
agtggttttatcaacgaaatggggtttgagacctatcaaaaactgatgcaggaagctttg
gaagagttaaaagatgatgaggattttgagaatttatttgataatgaagaggatagacaa
aaactctttaaatcggtaaaagatgtaaatatagataccgacctggagcttatgcttcct
gatttttatatttctaatacggaagaaaggttatcactctatcagaaaattgctgaaata
gataatgaaaaagatcttcaaaaatttgaaaatgaactgattgatcgttttggtgatttg
ccaaaagaggctgttaatcttttaaaaagtgtatccttgaagtggctggctgctgatatt
ggttttgaaaagattgttatgaaaaatggagtctttttaggatattttccaagtaatcca
caggataagttttatcagaccgataagtttaagcatattattagttatttaacccaaaac
ccttcagaagcacagcttaaggaaaaaatagggaaagaaggaaataacctgatgatgcga
aaagataaagtaaaaaatgtagatgaggttaatcttttattaaagtcgattttggcttta
tag
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integrated database retrieval system
