Chryseobacterium piperi: CJF12_16755
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Entry
CJF12_16755 CDS
T05071
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
cpip
Chryseobacterium piperi
Pathway
cpip03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cpip00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CJF12_16755 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cpip03400
]
CJF12_16755 (ligD)
Enzymes [BR:
cpip01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CJF12_16755 (ligD)
DNA repair and recombination proteins [BR:
cpip03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CJF12_16755 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
DNA_ligase_OB_2
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
ASW75768
UniProt:
A0A086BLV6
LinkDB
All DBs
Position
complement(3797583..3799469)
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AA seq
628 aa
AA seq
DB search
MLAKSFEKAFDDKEWVFEIKWDGYRAVADLRNEEPLFYSRNGISFLSKFEKVARDFSRQK
YKMVIDGEIVAYNNEGRPDFQLLQQIGDHPDLALVYQVFDLLWLNGHSTEDLPLIQRKEL
LKEALVETDTIKYCDHIPEKGIAFFNQMKKMKLEGMIAKKSNSLYLENYRNSDWLKIKFT
NTDEAIICGFTEPRGSRKGFGALILGKYIGDQLIYSGHTGTGFNAESLSKLHEELKKLVI
KQSPFEDIPKTNMPVTWVKPELVCEIKYSEITKDGIFRHPVFIAIREDKEPEDIKGTTDK
TKPSKEKLKEMKAKTSSKKTDTTSEKEKEITLNRHSVKLTNQDKIYFPKDGITKGDVVEY
YQSIADYILPYLKNRPLSLNRFPNGIEEQGFYQKDASDHIPEWVKTTKVYSESNDKYIDY
IYCNDKATLAYLNNLGCIDLNPWNSSLPDLEHPDYLVLDLDPSKKNTFDDVIETALQVNE
VLNSIKIKGYCKTSGSTGIHIYIPMGGKYDFEQVKDFAHILMKQVYDKLPKITTLERSLQ
KRDDKKIYLDYLQNRTGQTLASAYSLRPKEGASVSMPLEWDELKPGLKPTDFNIHNALDR
IKEKGDLFKPVLGKGIDMVKALDLLQNL
NT seq
1887 nt
NT seq
+upstream
nt +downstream
nt
atgcttgccaaatcctttgaaaaagcatttgatgataaagaatgggtttttgaaataaaa
tgggacggatacagagcggttgcagatctcagaaatgaagaacctcttttctattcaaga
aacggaatttcctttctatcaaaatttgaaaaagtagcacgggatttcagccggcaaaaa
tataaaatggttatagacggtgagattgttgcttataacaatgaaggaagacctgacttt
caactactacaacaaatcggagatcatcccgatttagctttggtttatcaggtatttgac
ctgctttggcttaatggccattctaccgaagatcttccgcttatccaacgaaaggaatta
ttaaaagaagcattggtagaaactgataccatcaaatattgtgaccatattcctgaaaaa
ggcattgcatttttcaaccagatgaagaaaatgaaactggagggcatgattgctaaaaaa
tcaaacagcctctatctcgaaaattacagaaatagtgattggcttaaaataaaatttacc
aataccgatgaagctattatctgtgggtttacagaacccagagggtcgagaaaaggcttt
ggagctttgattttggggaaatatataggagatcagttaatttactcaggccatacagga
acaggctttaatgcagagtctcttagcaagctgcatgaagagttgaaaaaacttgtcata
aaacaatccccttttgaagatattcctaaaaccaatatgccggtcacctgggtaaaaccg
gaattggtatgtgaaataaaatattctgaaattacaaaagacggtatcttccgccatccg
gtttttatagcaattcgtgaggataaagaaccggaagatattaaagggacaacagacaaa
acgaaaccctccaaagaaaaacttaaagaaatgaaagctaaaacctcttccaaaaaaacc
gacacaacatctgaaaaagaaaaggaaatcacattaaaccggcattccgtaaaactcacc
aatcaggataaaatatattttccaaaagacggcattaccaaaggtgacgttgtggaatat
tatcaatctattgcagattatattctcccttatttgaagaatcgtccattatctttaaac
cgtttccccaatgggattgaagaacagggtttttatcagaaagatgcgagtgatcatatt
cctgaatgggttaaaacaacaaaggtctactcagaatctaatgataagtatatcgattat
atttattgtaatgataaagcaacgttggcttacctcaataatctaggatgcattgacctc
aatccctggaatagttcactcccggatctggaacatcctgactaccttgtcttagacctt
gatccttcaaagaaaaatacatttgatgatgttattgaaactgcccttcaggttaacgaa
gttttaaattcaattaaaattaaaggatattgtaaaacatcaggaagtactggaattcat
atctatattcctatgggtggaaaatatgattttgaacaggtgaaagatttcgctcatata
ttgatgaaacaagtttatgacaagcttcccaagataaccacattagaaagaagtttacaa
aaaagggacgataagaaaatttatctcgattacctgcaaaaccgaacaggacaaacatta
gcaagtgcttatagcttaagacctaaagaaggagcttctgtttcgatgcctttggaatgg
gatgaactgaaaccaggtttaaaacctactgattttaacattcataatgctctggacaga
attaaagaaaaaggagatttgtttaaaccagttttaggaaagggaattgatatggtaaaa
gcgttagatctattgcaaaacctttag
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