Chiloscyllium plagiosum (whitespotted bambooshark): 122540225
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Entry
122540225 CDS
T08871
Symbol
trim62.1
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM62 isoform X1
KO
K12030
tripartite motif-containing protein 62 [EC:
2.3.2.27
]
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cpla04121
]
122540225 (trim62.1)
Enzymes [BR:
cpla01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
122540225 (trim62.1)
Ubiquitin system [BR:
cpla04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
122540225 (trim62.1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SPRY
PRY
zf-C3HC4_4
zf-RING_UBOX
zf-C3HC4
zf-C3HC4_2
zf-C3HC4_3
zf-B_box
zf-RING_2
CorA
zf-RING_5
zf-RING_6
zf-RING_10
zf-ANAPC11
U-box
Phasin
TryThrA_C
zf-Nse
GCS2
KxDL
DUF2383
NPA
DUF1759
TSNAXIP1_N
Fib_alpha
LMBR1
Motif
Other DBs
NCBI-GeneID:
122540225
NCBI-ProteinID:
XP_043531554
LinkDB
All DBs
Position
34:complement(15033931..15114650)
Genome browser
AA seq
474 aa
AA seq
DB search
MACGLKDELLCSICLSIYQDPVSFGCEHYFCRKCITEHWNRQDHSSRDCPECRRTFRDPL
LSPSLKLSNIVERYSAFPLDAILQAQRNSFPCKDHDKVKLFCLNDKCLVCFFCDEPALHE
QHHVTNIEESFEEIQRELKDQYEVLQDSERGHVKALQLLKRQLSETKSSAKSLRATIAEA
FDRLHRFLKEKQKSMLEELETDTARTLNDIEQKIQRYSHQLREVQEGMQILQEKLVEADK
LIFLEGINTTLERLKGKIHETNLTYEDFPTSKYMGPLQYTIWKSLFQDIQPVPAALTLDP
ITAHQRLILSDDCTIVAYGNLHPQPLQDSPKRFDVEVSVLGSDGFDSGVHYWEVMVSEKT
QWMIGVALESVNRKGSIQIQPSRGFYCIVMHDGNQYSACTEPWTRLNVKSKLEKVGVYFD
YDKSLLTFYNADDMSWLYTFREKFTGKFFPYFSPGQSHANGKNVQPLRINTVRI
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
atggcttgcggtctcaaagatgagttgctgtgctctatctgcctcagcatctaccaggac
cccgtgagctttggttgtgaacattatttctgtaggaagtgtatcactgaacattggaac
agacaggaccacagctccagggactgccccgagtgcaggaggacgttcagagaccccttg
ctctcccccagccttaagttgtctaatatcgtggagaggtacagcgctttccccctagac
gccatcctgcaagcccagaggaactccttcccttgtaaggaccacgacaaagtcaagctg
ttttgcttgaacgacaaatgcctggtgtgcttcttttgcgacgagcctgctctgcacgaa
cagcaccatgtcaccaacatcgaggaatcctttgaagaaatccagagggaattgaaggat
caatacgaggttttgcaggacagtgagcgtggacatgtgaaggctttacaactactcaag
cggcagctctctgagacaaagtcttctgcgaagagtcttcgagcaaccattgcagaagcc
tttgaccgcctgcaccgtttcttgaaggagaaacagaagtctatgctggaagagttggag
accgacacagcccgcaccctgaatgacatcgagcagaagatccagagatacagccaccaa
ttgcgtgaggtgcaggaggggatgcagatcctgcaagagaaacttgttgaggcagacaag
ctgattttcctggaaggaatcaacaccactttggagaggttaaagggaaagatccatgag
accaatttaacttacgaggatttcccaacctccaagtatatgggtcccctgcagtacacc
atttggaaatccttgtttcaggacattcagccagtgccagcagccctgactctggatccg
ataacggctcaccagcgcctcatcctgtccgatgactgcaccattgtggcttatgggaat
ctccacccgcagcctttgcaagactcgcccaagcgcttcgatgtggaggtgtccgttcta
ggttcggacggcttcgacagtggtgtccactactgggaggtgatggtgtccgagaaaacg
cagtggatgattggcgtggcactggagtctgtcaaccggaaaggaagcatccaaatccag
ccttcaagaggcttctattgcattgtgatgcatgatgggaaccagtacagcgcctgcacc
gagccctggacccggctgaacgtcaagtccaagttggagaaggtcggcgtctattttgac
tacgataaaagcctcctgaccttctacaatgctgatgacatgtcctggctttacactttc
cgagagaaattcactggcaagtttttcccatacttcagcccagggcaaagtcacgcaaat
gggaaaaatgttcagccactgcgaatcaacaccgtccggatctaa
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