Chiloscyllium plagiosum (whitespotted bambooshark): 122544102
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Entry
122544102 CDS
T08871
Symbol
ddx21
Name
(RefSeq) nucleolar RNA helicase 2
KO
K16911
ATP-dependent RNA helicase DDX21 [EC:
5.6.2.7
]
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cpla03009
]
122544102 (ddx21)
03036 Chromosome and associated proteins [BR:
cpla03036
]
122544102 (ddx21)
Enzymes [BR:
cpla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122544102 (ddx21)
Ribosome biogenesis [BR:
cpla03009
]
Eukaryotic type
Pre-60S particles
Helicases
122544102 (ddx21)
Chromosome and associated proteins [BR:
cpla03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
122544102 (ddx21)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
GUCT
ResIII
CMS1
DUF2746
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
122544102
NCBI-ProteinID:
XP_043539075
LinkDB
All DBs
Position
46:11943529..11977312
Genome browser
AA seq
695 aa
AA seq
DB search
MPARLSPQPEDPEPTMEAESVSRKSHKKSKKEKRKHSEKSEHKKAKNRENGEFDEGESEL
KPPKAKKHKSEDHEDRDASRSRKSEKNGVVRESKQETAPRSSDDSSQYSEGEIEEELTPE
QKEGAFSNFRISQETIELLKERGVTYLFPIQARTFNYIYDGDDCVAQARTGTGKTFSFAI
PLVEKLQSEAVDRRRNRPPKVLVLTPTRELAIQVAKDFKDVTKKLSVSCFYGGTAYAGQM
DSIRNGIDILVGTPGRIRDHLQNMKIDLSKLKHVVLDEVDQMLDMGFAEQVEDILKVAYK
KDSKDNPQTLLFSATCPAWVYQVAKKYMRAQCKQVDLIGKRTQRAATTVEHLAIACHWTQ
RAAVIGDVIQVYSGSHGRTIIFCETKKEVNELVMNNSIKQDAQCLHGDIPQKQREITLKG
FRDGSFEVLVATDVAARGLDIPEVDLVIQGCPPKDVDSYIHRSGRTGRAGRTGICICFYQ
KMEEGHLRFLEHKAGLTFKRVGVPTAADVVEASCKDAIRSLDSIPAAAIEHFRPAAESLI
EQRGALQALAAALAHISGARSIEQRSLLNSDAGYTTMVLACSIEVHSLSYAVRGLKEQLG
ENVENKVKRMQFLKGKMGVCFDIPEDCLEALKGSWQDTRRWQLTVATKLPELEEDRHDGG
SRYRNRSFNRGGGRGFSRNQNGRSMKRNFNRAFNW
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
atgccggctcgactcagccctcagcccgaggacccggagcccacgatggaagccgagtct
gtcagcaggaaatcacacaagaaaagcaagaaagagaagaggaaacattccgagaaaagc
gagcacaaaaaggccaagaaccgggagaatggcgagttcgacgaaggagaaagtgaactt
aagcctccgaaagcaaagaagcacaagagcgaggatcatgaggacagggatgccagtagg
agccgaaagtctgagaaaaatggggtggtgagagaatccaagcaggaaacggccccgcgc
tccagcgatgattccagtcagtattccgagggggagatcgaggaggaactgactccagaa
cagaaagaaggagccttttcaaacttcaggatttctcaagaaacgattgaactactaaag
gaacggggagtgacctacttgtttccaatacaagcacggacattcaactacatctatgat
ggggatgactgtgtggctcaggccaggactggcactggcaaaactttctcctttgcaatt
cctttggtggaaaagctgcagtcagaggctgttgaccggaggagaaatcgtcctcccaag
gtccttgtgctcactccaacaagggaactggcaatccaagtcgcgaaagacttcaaggat
gtaaccaagaagctcagcgtctcttgtttttatggtggaacagcatacgctgggcaaatg
gacagcattcggaatggcattgatattttggtggggacgcctggaaggatcagggaccat
ctacagaacatgaaaatcgacctgtctaaactgaagcatgtggtcctggatgaagtggac
caaatgttggacatgggctttgctgaacaggtggaagacattctgaaagttgcatacaaa
aaagattccaaagacaatcctcaaacactcctcttctctgcaacttgccctgcctgggtt
tatcaagtcgcaaagaaatacatgagagcacagtgcaaacaggttgatctcattggaaaa
cggactcagagagctgctacaactgttgagcatttggccatagcatgtcactggacacag
cgagcggcagtcattggtgatgtaatccaggtttacagtggcagtcatgggcggactatt
atcttctgtgaaacaaagaaggaagtaaatgagctggtgatgaacaactcaataaaacag
gatgctcagtgtcttcatggggacattccacagaagcagagagagatcaccttgaagggt
ttccgggatggctcttttgaggtcctggttgcaactgatgtggctgctcgtggcttggac
attccagaggtagacctagtaatacagggttgcccaccaaaggatgtggattcctacatt
caccgttctggtcgaacgggcagagctgggcgcacagggatttgcatctgtttttatcag
aaaatggaggagggccatctgagatttttggaacacaaagctgggttgacattcaaacgt
gttggagttccaacagccgcagacgttgttgaagcttcctgcaaggacgctatccggtct
ttggattccatcccagcagcagccattgagcatttccgtccagcagctgaaagcctgatt
gagcagcgaggagcattgcaagctttggctgctgctttggcacacatctcaggagcaagg
agcatagagcagcgttctctcctgaactctgatgcaggatatacaacaatggtattggcc
tgttcaatagaagtacacagtttgagctacgcagtgagagggctgaaggaacaactcgga
gagaatgtggaaaacaaagtgaaaaggatgcagttcctaaagggtaaaatgggtgtttgt
ttcgatattcctgaagactgtctggaagccttgaagggaagctggcaggacactcggcgc
tggcagctcaccgtagcaaccaagttaccagagctggaggaggacagacatgatggaggg
tccagatacagaaatcgctccttcaacagaggaggagggagaggattcagcaggaatcag
aatggcagaagcatgaagagaaatttcaaccgagccttcaactggtag
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