Chiloscyllium plagiosum (whitespotted bambooshark): 122548987
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Entry
122548987 CDS
T08871
Symbol
virma
Name
(RefSeq) protein virilizer homolog isoform X1
KO
K22910
protein virilizer
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpla03019
]
122548987 (virma)
Messenger RNA biogenesis [BR:
cpla03019
]
Eukaryotic type
mRNA processing factors
3' end processing
N6-methyltransferase complex
122548987 (virma)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VIR_N
Motif
Other DBs
NCBI-GeneID:
122548987
NCBI-ProteinID:
XP_043543987
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All DBs
Position
4:40895343..41002870
Genome browser
AA seq
1860 aa
AA seq
DB search
MADTAAELLFLDTFKHSNSEQNTHVDVVRFPCVVYINEVRVIPPGVKAHNNLPDSRAYGE
TSPHAFQLDLFFNNVSKPSAPVFDRLGSLDYDENASIIFRPNNKINTDGIVLRGWYNCLT
VAIYGTVDRVISHDRDSPPPPPPPPPPPQQQQQQQQQQQQLQPQQLQLQQQQPTLKRSIK
HDWDKEDQYNENPPRPQPRGPRTPPGPPPPDDDDEEETLPQTLCPDKVDESEHREDYFEP
ISPDHSSNHQEAQLTDAEEEEEPPEEEKEDEEEDPEVEEEDEDQQTVESIEEEEGDVEEE
AREEVDEDDGYEQISSDEDGIADLERENYKLNFDIDYTAEDLASVPTMAYDPYDRDIGPL
LYFNPPYRTKYENEVARLKELDLDKVGAANIEAAVKLKELLELYKDDRGAKWVMALEEVP
SLLVKGLSYVQLFESDQDHLKQLVDWTMDALSLHTAVTQPIALNVRQLKAGTKLVSSLAE
CGSEGVSALSAAGIIDKLFVLLFAEHMSSSLKLNTLKALDSFVSVAEGMEKFLNSKTEEQ
KSGYQRLVELILTDQTVRVVTAGSAIVQKCHFYELLSDLERLASHLAESTPVPSNMSEVD
HDVNIGQEKGNKSNEEVDLEAPMDLDHLLEASNISEVEVEKIVSILDELLHLLEAAPYSM
TQPPVKSFPTAARITGPPERDDPAPALLRYLNSCHFLESLTLLLSIPATNGHPSVLQSIK
DLIKFLIQIQTGLLFLSTEYEATNLLIRALSQTSDQDQEEGIQTENSNDDTLAIWLLYSL
QALQYVSELFDYLNRGLAVEETDRADVLGTLHSLYLITFNPIGRNAVSHVLQLDKNLSSL
ITLMEYYSKELLGDTKSRKSVACNYACMLILLTVQSTHDAQMLEQHSAGLLRLCKADDTN
PKLQELGKWLEPLKNLKFEINCIPSLLEYIKQNLDNLTIQMTQEGAGLTTALRVLCHIAC
PPHPLEGQQKDLKWNLAIIQLFSAEGMDILIRILQKLNSVLILPWRLHANMGTTLQRIMI
LSITRCTLSLLKAMLTELLRGGSFEFKDVRVPTVLVTLHMVLCSIPLSGRLDDEEQKIQN
DIVDILLTFTQGVNEQVAYSEESLANNTWSLMLKEVLSFVLKTPEGFFSGMLLLSELLPF
PLPMQTTQPISSEGVAIALNTRKLWSIHLQIQAKFLQEIVRSSFGSTCQTLQQILRRVCI
QLCDLASPTALLILRTVLDLIVEDLSSPLEGKERVSTAQTARLLALLDSLASHGACKAAL
LHLLSGTSKGDERFVEVFQVMLELLQTAVDNVHHQHCAEYIASFVQSLCDQDISLMLTNS
TEGPGSDLEQLSNSLPNGELLSQICDSFLQALANSETTYTTVLTCLRTMMFLTEHEYGFF
YLKSALRQNNNAIHCLLKRVVHNFNKEMAELASSLLDFLRQIINTDSLGNCGDEGAPMEV
DGFQTPRSSALSGAEVKQLLKWKESADDHLLFELDKVVTELCKEDDSFDSLLENVVGLRQ
MLESTTDVLPVTTQDVEPVLPVSESLPVQFNNRTAYVLADVLDDQLKTLWLSPFQTEEID
TDIDMVKVDLIDLAEKYCCDMDLKAELERSFLSEPSSPVVAKVAKGFKLGKHKHETFITS
SGKSEYIEPAKRAHIVPPPRGRGRGGFGSNCRPHDIFRQRKQNTSRPPSMHVDDFVAAEC
KDVPSSGPPPAKRTNKGPQKAPRGGFSGNRGGRGVFHNQNRFFSPPAPKEDLTFLPGHAV
GLLHPSTRNQFHLCGGISSPFYAANSLDEWGNYSRREGGRGSSWSVQNSPRGTYSENRGG
QSNFNKGLPSRQPSTGYRQSPRDRTSRGRGAGPSWGGGSSRGKFSGGSSGRGRHVRSFTR
NT seq
5583 nt
NT seq
+upstream
nt +downstream
nt
atggcggatacagcggctgagctgctgtttttagatacgtttaaacactcaaactcagag
cagaatacgcatgtggatgtcgttcgctttccgtgtgtggtttacataaatgaagttcga
gttattcctcctggtgtcaaagctcacaacaacttgcctgatagcagggcatatggggag
acctcacctcatgcatttcagctagacctgtttttcaacaatgtcagcaaaccaagtgcg
cctgtttttgatcgattaggaagccttgattacgatgaaaatgcatctattatatttaga
ccaaataataagatcaatacagatggaattgtcctgagaggttggtacaactgtctaact
gtggcaatttatggaactgttgatcgggtgataagtcatgacagagattcccctcctcca
cctccacccccacctcctccaccgcaacagcagcaacaacagcagcagcagcagcagcaa
cttcagccacagcaacttcagctgcagcagcaacagccaactcttaaaaggagcataaaa
catgattgggataaagaggatcaatacaatgaaaatcctccaagaccacagccaagggga
ccacgaacaccacctggtcctcctccacctgatgatgatgatgaggaggagacactgcca
cagaccttgtgtccagataaagtggatgaaagtgaacatagagaggattactttgaaccc
atctctccagatcattcttccaatcaccaggaggcacagttaaccgatgctgaagaagag
gaagagcctccagaggaggaaaaggaagatgaggaggaagatccggaagtagaagaggaa
gatgaagatcaacaaaccgttgaaagcattgaagaagaggagggtgatgtggaagaggaa
gcaagggaagaagttgatgaagatgatggctatgaacaaatctccagtgatgaagatgga
attgcagatttggaacgtgaaaattataaattaaattttgacattgattataccgctgaa
gatctggcatccgtgccgactatggcatatgatccttatgacagagacataggacctctt
ttatactttaatcctccctataggactaaatatgaaaatgaagttgctagattaaaggaa
cttgacttagacaaagtgggtgcagcaaatatagaagctgctgttaagttaaaagaactg
cttgaactatacaaagatgaccgaggtgccaaatgggtaatggctttggaagaggtgccg
agtttactggttaagggtttgagttatgttcagctatttgaaagtgatcaggaccatctg
aaacaactagtagactggaccatggatgctttaagccttcacacagctgtaacacaacct
atagcactgaatgtcagacagctaaaagctgggacaaagcttgtttcttctttggctgaa
tgtgggtctgaaggagtttcagccctttcagcagcaggtattattgataaactcttcgtt
ctgttgtttgcagaacatatgtcatcttctttaaaactaaacacactcaaagctttggat
agttttgttagtgtagcagagggaatggaaaaattcttgaacagtaagacagaagaacaa
aaaagtgggtatcaaaggttagtggaacttatactgactgaccaaactgtgagggttgtg
acagcaggcagtgctatagtgcaaaaatgccacttctatgagcttttgtcagatttggaa
aggttggcttctcatcttgcagaaagtactcctgtcccttcaaacatgagtgaagtagac
catgatgttaatattgggcaagagaaaggaaacaaaagtaatgaagaagtagatctcgag
gctccgatggatttggaccatttattagaagcttctaatataagtgaagtggaagtagaa
aaaattgttagcattcttgatgaacttttgcacttgttggaggctgcaccttattcaatg
acccagccacctgttaagtcatttccaacagctgctcgcatcacaggccctccagaaagg
gatgatcctgcacctgctctgttaaggtatcttaacagctgccattttttggaatcactc
actctgctgctgtctattcctgcaaccaatggccatcctagcgtgttacagtctattaaa
gacctgattaaattcctaattcagatacaaactggtcttttattcctcagtactgagtac
gaagcgacgaatttgctgatacgagccttgtctcagacttctgatcaagatcaggaggag
ggtatccaaactgagaatagcaatgatgatacattggctatatggcttttgtattcatta
caggcattgcagtatgtttctgaactttttgactacttaaatcgaggtttagcagttgag
gaaacagatcgtgcagatgtattaggaactcttcatagcctctatctgattacattcaat
ccaattggacgaaatgctgtgtcccatgtcctccagctggataaaaatctttccagtctc
attactcttatggaatactattccaaagagctcttgggagacacaaagtccagaaaatct
gttgcatgcaattatgcctgcatgcttattttgctaacagtgcaatcaactcatgatgca
caaatgctggaacagcattctgctggattactgagactctgtaaggctgatgataccaat
cccaaactacaagaattgggtaaatggttggagccactgaagaatctcaagtttgaaatt
aattgtattcctagtcttcttgaatatattaaacagaatctggataatttgaccattcaa
atgactcaggaaggtgctggactaaccactgcactacgtgtcctttgtcacattgcgtgc
ccccctcaccctcttgaaggtcagcagaaagatcttaagtggaatcttgcaattattcaa
ttgttttctgcagaaggcatggacatacttattcgaatacttcaaaaactcaacagtgtc
ttaatacttccctggagactgcatgcaaatatgggaactacattgcagaggattatgatc
ctttccattacaagatgcactctttcccttttgaaggcaatgttgacagaacttctaaga
ggagggtcttttgaatttaaggatgtccgagttcccacagtactggttacactccacatg
gttctttgctctatacctctgtctggacgactggatgatgaagagcaaaagattcagaat
gacattgttgatattctacttacttttactcaaggagtcaatgagcaggttgcttattct
gaggaatcgttggcaaacaacacatggtcattaatgttaaaggaagtcctttcctttgta
ttgaaaacaccagaaggatttttctctggaatgttactgctttcagaactcttgcctttt
ccactgcccatgcaaaccacacagccaatttcatcagaaggtgtagctattgcactgaat
acccgaaaactgtggagcattcaccttcaaatacaagcaaagttcctgcaagaaatagta
cgttccagctttggatccacatgtcaaactctgcaacagatacttaggcgtgtgtgcata
caactgtgcgatctggcttctcctacagctctccttatcctaaggactgtattggacttg
attgtagaagatttgagcagtcctttagaaggaaaagagagagtctccactgcccagact
gcacgtctgcttgcactgctggattctttagcttcacatggagcttgcaaggctgccctt
ttacatcttttaagtggaaccagcaaaggtgatgagagatttgtggaggtctttcaagta
atgctggaattgctacagacagcagttgacaacgtacatcaccagcactgtgctgaatat
attgcttcttttgtgcagtccctctgtgaccaggacatttcattgatgttgacaaactca
actgagggacctggttctgacctggaacagctatccaattccctgccaaacggagaactt
ctatcacaaatatgtgacagtttcttgcaagcactagctaacagtgagaccacttatacc
acagtacttacatgtctcaggaccatgatgtttttaacagaacatgaatatggctttttc
tatttgaagagtgctttgagacaaaataataatgcgatccattgtctgctgaaacgtgtg
gtccataacttcaacaaagaaatggctgagctggcttcttcattgttggattttttgcgc
cagatcataaacacagatagtttgggtaattgtggcgatgaaggtgctcctatggaagta
gatggtttccaaactccccgttcttcagcactcagtggtgcagaagtgaagcagctccta
aaatggaaggaatctgcagatgatcatttgctgtttgaactggataaagttgttacggaa
ctgtgtaaagaggatgatagtttcgactctttattagaaaatgttgttggattgcggcag
atgttagaatcaactacagatgtattgcctgttactacacaagatgtggaacctgttctt
cctgtttctgaatctcttccagtccagtttaacaacaggacagcatatgtcttggcagat
gtcctggatgaccagctaaagacattatggctttccccgtttcaaaccgaagagattgac
acagatatagatatggtcaaggttgacttgattgacctagctgagaagtactgctgtgat
atggatctgaaagcagaactggaaagatcattcctttcagaaccctcgtctcctgttgta
gccaaggtagcaaaaggctttaaactgggaaaacacaagcatgaaaccttcattacttcc
agtggaaaatctgaatatatagagcctgccaaacgagcccatatagtaccacctccccga
ggtcgaggcagagggggatttgggtcaaattgtagacctcatgatatatttcggcaacgg
aagcaaaacacaagcagaccgccttcaatgcatgtggacgattttgtagcagcagagtgc
aaagatgttccttcctctggtccacccccagcaaaaaggacaaataaaggacctcagaaa
gctcctcgtggtggattttctggaaatagaggaggtcgtggtgtctttcataatcagaac
cgtttcttttctccacctgctcccaaagaagatctaacttttcttccaggtcatgcagta
ggactccttcatcctagcaccagaaatcaatttcatttgtgcggtggtatttcaagccct
ttttatgcagcaaacagtctggatgaatggggaaattatagccgtcgtgaaggaggacgt
gggtcaagctggagtgtccagaatagtccccgtggtacatacagtgaaaatcgaggtggt
caaagcaattttaacaaagggctgccatcaagacagccttcaacaggataccgtcaaagt
cctcgtgatcgtacatcgaggggtcgaggagcaggaccatcatggggaggaggcagctca
aggggaaagttcagtggaggaagcagcggaaggggtagacatgtgcgatcctttacccgc
taa
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