Chiloscyllium plagiosum (whitespotted bambooshark): 122550447
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Entry
122550447 CDS
T08871
Symbol
lig4
Name
(RefSeq) DNA ligase 4 isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Pathway
cpla03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
122550447 (lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cpla03400
]
122550447 (lig4)
Enzymes [BR:
cpla01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
122550447 (lig4)
DNA repair and recombination proteins [BR:
cpla03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
122550447 (lig4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_IV
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
RTT107_BRCT_5
Motif
Other DBs
NCBI-GeneID:
122550447
NCBI-ProteinID:
XP_043547120
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All DBs
Position
6:complement(10078232..10102740)
Genome browser
AA seq
943 aa
AA seq
DB search
MLLKCYEIPASATLSVIEFQVTSVHYYPEFNMSAASASNNSLIKTVASKVPFSDLCSTLE
KIQKSRSRPDKNKYFKDFLDSWRNFHDTLHKNDLNTTDSFYPALRLILPQLERERMAYGI
KETMLAKLYIDVLGLPKDGKDALKLLNYRAPTSSHGEAGDFAVIAYFVLKQRCPNKGTLF
VQDVNEHLDSIALNNAAKKKDLIKKSLLQLICQSSALEQKWLIRMILKDMKLGISQQTIF
QLFHPDAAELHSVTTDLEKVCKQLHDPTVSLSDVSIMMFSPFRPMLAAIANIKHIEKLMH
NQSFYLETKLDGERIQLHKDGDVYKYFSRNGYDYTQQFGASPLQGSLTPFIHNTFKSNLQ
NCILDGEMMAYNPITQTFTQKGNKFDIKRMVEDSELQTCFCVFDVLMVNNQKLANETLRK
RHEILQTLFTSVPGRIQVVEKTEIKSRKDVADALNEAIDKREEGIMVKDPLSVYKPDKRG
EGWSKIKPEYVDGLMDELDILIVGGYFGKGHRGGMVSHFLCAVAEPASPGEKPSVFHSLC
RVGSGYTMKELYDLGQKLAVHWKPYRKRDPPPNILCGTEKPEVYIEPCNSVILQVKAAEI
VSSDMYKTGCTLRFPRIEKIRDDKDWHDCMTLHDLDQLHDKASGKLASRHVDLDDEELDK
KKRKIPSKSKKLIGIAEQFKAQDLSSVDKVSNIFEDVEFCVLNGLDDHPKAELEKGIAEC
GGLVVQNPGPDTYCVIVGKVNIRVKNLIAANELDVVKADWLVHCLQKKCFIPWQPQFMIH
MSPCTEKHFAQEYDCYGDSYYADVNKSHLREIFKRMSKPEHHLPFKAIADLEQRYLWDAS
PLCMFRHCIVYVDLYAIIGDASAQVHGTSLDLRVLELRFHGAQCVTNLTEGVSHVVVGRD
VRRLSELKLLRMTFERKFKIVLESWVTDSVKAGSVQDEKNYLL
NT seq
2832 nt
NT seq
+upstream
nt +downstream
nt
atgcttcttaagtgttacgagattcctgcttctgctaccctttcagtcattgagttccag
gttacatctgtgcactattaccccgagttcaacatgtctgcagcatctgcatcaaataat
tcgctaataaagactgtggccagtaaagtgcctttttctgacttgtgttcaacactggaa
aaaatccagaaaagtaggtccagacctgataaaaataagtatttcaaggactttctggat
tcgtggagaaatttccatgacacactccataagaatgatttaaacactactgattccttc
tacccagcactgcgtctaattcttcctcagctcgaaagggaaaggatggcatatggaata
aaagagacaatgcttgccaaactttacattgatgttcttggtctaccaaaagatggaaaa
gatgcacttaagcttctgaactatcgagctccaaccagttcacatggagaggctggtgat
tttgctgtgattgcatattttgttttgaagcagaggtgtccaaataaaggcacgctgttt
gtgcaggatgtgaatgaacatttggattctattgcactcaataatgctgccaagaaaaaa
gatttgatcaaaaagagtctgctgcagctaatctgtcagagttcagctttggaacaaaag
tggcttattcgtatgatcttgaaagatatgaaacttggtatcagtcagcagactatattc
cagttattccacccagatgcagcagagcttcacagtgtaacgacagatctggagaaagtt
tgtaaacagcttcatgatccaacagtgtccctcagtgatgtctctatcatgatgttctct
ccttttcggccaatgcttgccgccattgctaacataaaacacattgaaaagttaatgcac
aatcagagcttctatttggaaactaagctggatggagagcgtatccagcttcacaaggac
ggagatgtttacaaatatttctcacgcaatggatatgattacacccagcagttcggtgct
tctccattgcaaggatccctcacaccatttattcataataccttcaagagcaatttgcag
aactgcatacttgatggagaaatgatggcttacaaccccatcactcaaacctttacgcag
aagggcaacaagtttgacatcaaaagaatggtggaagactcagaattgcaaacttgtttc
tgtgtctttgatgtgttaatggtaaataaccagaagctggcaaatgaaaccctcaggaaa
aggcatgaaattcttcaaactctcttcacatcagtgccagggcgcattcaggttgtggag
aaaactgagataaaatcaagaaaggatgtagctgatgccctaaatgaagcaatagataaa
agggaagaaggaatcatggtgaaagatcctttgtctgtgtataaaccagacaagcgtggt
gaaggctggtcaaaaattaagccggagtatgttgatggcttgatggatgagcttgatatc
ttaattgttggtggttactttgggaaaggacatcgcggtggaatggtatctcacttccta
tgtgctgtcgcagagcctgcttcacctggtgagaaaccatcagtcttccactcgctttgc
cgtgtcggatctgggtacaccatgaaggaattgtacgatcttgggcagaaactggctgta
cactggaaaccgtaccgcaaaagagatcctccaccaaatatcctctgtggcacagaaaaa
ccagaggtctacattgagccatgcaattctgttattctacaagttaaagcagctgagatt
gtgagcagtgatatgtataaaactggttgcaccttgcgttttccgcgaattgaaaagatc
agagatgataaggattggcatgattgtatgacattacatgatttggatcaattgcatgat
aaggcatccgggaaacttgcatcaagacatgttgacctagatgatgaggaactggacaag
aaaaagcgtaaaattccttcaaagtccaaaaagttgattggcattgcagaacagtttaaa
gcccaagatctgtccagtgttgacaaagtttctaatatttttgaagatgttgaattttgt
gtcttgaacggtcttgatgaccatcctaaagcagaactagaaaagggaatagctgaatgt
ggagggttggtcgtgcagaaccctgggccagacacttattgcgttattgttggcaaagtt
aatatccgcgtcaaaaaccttattgctgctaatgagcttgatgtggtcaaagctgactgg
ttggtgcactgtttgcaaaagaagtgttttataccatggcaaccccagtttatgattcat
atgtcaccttgcacagaaaaacattttgcccaggaatatgattgctatggagacagttat
tacgctgatgttaataaaagccatctgcgggagatattcaaaagaatgagtaaaccagaa
caccatttaccctttaaagctattgctgacttggaacagcgttacctttgggatgcgtca
cctctatgtatgttcagacactgcatcgtttatgtagatctttacgctataattggtgat
gctagtgcacaggtacatggcacaagcttagatttgagagttttggagttgcgatttcac
ggtgcacaatgcgttactaatttgaccgaaggtgtctcacatgtcgtcgttggtcgtgat
gtacgacgtctttccgaactaaaattgctcaggatgacatttgaaaggaagttcaaaatt
gtactggaatcatgggtaactgattcagtaaaagcaggaagtgtgcaagatgaaaagaat
tacctactgtag
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