Chiloscyllium plagiosum (whitespotted bambooshark): 122556593
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Entry
122556593 CDS
T08871
Symbol
ddx46
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46 isoform X1
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Pathway
cpla03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122556593 (ddx46)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cpla03041
]
122556593 (ddx46)
Enzymes [BR:
cpla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122556593 (ddx46)
Spliceosome [BR:
cpla03041
]
Complex A
U2 snRNP components
U2 related factors
122556593 (ddx46)
Complex B
122556593 (ddx46)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
Motif
Other DBs
NCBI-GeneID:
122556593
NCBI-ProteinID:
XP_043559396
LinkDB
All DBs
Position
14:30503023..30572958
Genome browser
AA seq
1039 aa
AA seq
DB search
MGRESRHYRKRSASRGRSGSRSRSRSPAEKRSKLGDIRGRSRSRERDRRRDRSRSRDRRR
SRSRERKRLRIPQRCRMSVVTPKRSRSRERRRSRSREKRRSVSRGRSRRSHSQPRSRSRS
KSKERRSKSKDRIEVTNEAVKEKKKEEKDDDKDVSNFEQSKLEEEMRKRKERVEKWREEQ
RKKVVENIGEIKRELEEMKQGKKWSLEDDDDDEDEIIEGERKEEGDDDNEELDPLDAYME
DIKEEVKKFNMGSVKGGSEKKSGATVMKVMTVVTTKKPHSDMEKKKGELMENDQDAMEYS
SEEEEVDLQTALTGYQTKQRKLLEPVDHGKIEYEPFRKNFYVEVPELAKMTVEEVNAYRL
ELEGIAVRGKGCPKPIKSWVQCGISMKILSSLKKQGYEKPTPIQAQAIPAIMCGRDVIGI
AKTGSGKTIAFLLPMFRHIMDQRPLEESEGPVALISTPTRELALQITKECKKFSKALGLR
VVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANNGRVTNFRRVTYVVLDEADRMF
DMGFEPQVMRIVENIRPDRQTVMFSATFPRAMEALARRILTKPIEVQVGSRSVVCSDVEQ
HVIVIEEENKFLKLLELLGHYQENGSVIVFVDKQEHADGLLKDLMRAAYPCMSLHGGIDQ
YDRDSIINDFKTGVCRLLVATSVAARGLDVKQLILVINYSCPNHYEDYVHRVGRTGRAGN
KGYAYTFITEDQVRYAGDIIKALELSGNAVPLELEKLWDDFKEQQKAEGKTIKKSSGFSG
KGFKFDETEQVLANERKKLQKAALGLQDSDDEDTAVDIDEQIESMFNSKKRVKDMAMPGA
TNVQVPSAGNAEKLEIAKRLALKINAQKNLGAEAQVIQDVMQQATNAIMRGRTLQAPTVS
AKTIAEQKAEKINAKLNYVPAEKQDDEKPENAQTESFKRYEEELEINDFPQTARWKVTSK
EALQRISEYSEAAITIRGTYFPPGKEPKEGERKIYLAIESASELAVQKAKAEITRLIKEE
LIRLQNSYQPTNRGRYKVL
NT seq
3120 nt
NT seq
+upstream
nt +downstream
nt
atgggcagagagtccagacattatcggaagcgatctgcatcacgagggcgttctggaagt
cgctccagaagtcgttcacctgctgagaagcggtccaaacttggggatattagaggtcgc
tcacgcagccgagaacgtgatcggagaagggatcgctctcgaagtcgcgacaggagacgg
tcaagatctcgggaaaggaaacggctcagaataccacagagatgcagaatgtcagtggtc
acaccaaaacgttccaggagtcgagagaggaggcgatctcgcagccgtgaaaaacgacga
tcagtaagccgaggcagaagccgtaggtcacattctcaaccacgctctcgaagccgcagt
aagagcaaggaaagaagatcaaaatctaaagaccgcatagaagtcaccaatgaggctgtc
aaagagaagaaaaaagaggagaaagatgatgacaaagatgtcagtaattttgagcaaagt
aaattggaagaggaaatgagaaaacggaaagaacgtgttgaaaaatggagagaagaacag
cgcaaaaaggtcgttgaaaacattggtgaaataaagagagaacttgaagagatgaaacag
ggcaaaaaatggagccttgaggatgatgatgatgatgaagatgaaatcatagagggtgaa
aggaaagaagaaggagatgatgacaatgaagaattggatccattagatgcttatatggaa
gatataaaggaagaagtgaagaagtttaacatgggaagcgtgaaaggaggaagtgaaaag
aaatcaggtgctactgtaatgaaagttatgactgtggtaacgactaaaaagccacattct
gatatggagaaaaagaaaggagagctgatggagaatgatcaggatgcaatggagtattcc
tcagaggaggaagaagttgatcttcagactgcgctgacagggtatcagacaaaacaaagg
aagctgctggaacctgtggatcatgggaaaatagaatatgagccattccgaaagaacttt
tatgttgaagttcctgaactggcaaaaatgactgttgaagaagtgaatgcctacagatta
gagttagagggaattgcagtacgtggcaaaggctgtccaaaacctattaaatcatgggtg
caatgtgggatctctatgaagatattaagttcattgaaaaagcaagggtatgagaaacca
acgccaattcaagcacaggcaattcctgccatcatgtgtggacgtgatgtaattggaatt
gctaaaactggaagtgggaaaactatagctttccttttgcctatgttccgacatatcatg
gatcagaggccgcttgaagaatcagaaggtcctgttgcactcatctccacccccacccgt
gagttagcacttcagattaccaaggaatgcaagaagttctcaaaagcacttggattaagg
gtagtgtgtgtttatggtggaacaggaataagtgaacagattgctgagctaaagcgagga
gcagaaattatagtttgcacaccaggacgcatgatagacatgctagcagccaataatggt
cgtgtgacaaattttcgcagagttacctacgttgtacttgatgaagcagatagaatgttt
gatatgggttttgagccccaggtaatgcgaatagtagaaaacattcgaccagaccgacaa
acagttatgttttctgctacatttcccagagctatggaggccctagcacggcgaatatta
acaaagcctattgaagtgcaagtgggcagtaggagtgttgtttgctctgatgttgagcaa
catgtgatcgttatagaggaggagaacaaatttttgaagttgctggaacttttaggccac
taccaagaaaatggctctgtcatagtgtttgtggacaagcaagaacatgctgatggtcta
ttaaaggatctgatgagggcagcctatccctgcatgtcattacatggaggtattgatcaa
tatgaccgtgatagtataatcaacgatttcaagactggagtgtgtcgattgcttgtggca
acatcagtagcagctcgtgggctggatgtgaaacagctgattcttgttatcaattacagt
tgtcccaatcactatgaagattatgtacatcgagtaggacgtactggaagggcaggtaac
aaaggttatgcttatacattcattactgaagatcaagtccgttacgcaggtgatataatt
aaagccttagaattatcaggaaatgctgttccacttgagctggaaaagttgtgggatgac
ttcaaagagcaacaaaaggcagaaggaaaaactattaagaagtctagtggcttttcaggg
aaaggttttaagtttgatgagactgaacaagttctagcaaatgaaagaaagaaactacag
aaagctgctctgggtctacaagattctgatgatgaggacactgccgttgatattgatgaa
cagattgagagcatgtttaattccaagaaacgtgtaaaggacatggcaatgccaggagcc
actaatgttcaagtgccatctgctggtaatgcagagaaactggagattgctaagaggttg
gctttgaaaattaatgcccagaaaaatcttggtgcagaagctcaggtaattcaggatgtg
atgcagcaggcgacaaatgctattatgagaggccgcactctccaagccccaactgtatct
gctaaaacgattgcagagcagaaagcagagaagatcaatgccaaactcaattatgtgcca
gcagagaagcaagatgatgagaagccagaaaatgcacaaactgaatcgttcaagagatat
gaggaagagcttgagatcaatgatttcccacagactgccaggtggaaggtaacctccaag
gaagctcttcagaggattagtgaatattcagaagctgctatcactattagaggcacttac
tttcctccagggaaagagcccaaagaaggcgagcggaaaatctatcttgctatagaaagt
gccagtgaactagctgttcagaaagctaaagctgagattacgagacttattaaagaagaa
ctcattagactgcaaaattcataccagccaaccaaccgtgggcgatacaaggttttgtag
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integrated database retrieval system
