Cavia porcellus (domestic guinea pig): 100713813
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Entry
100713813 CDS
T07777
Symbol
Upf1
Name
(RefSeq) LOW QUALITY PROTEIN: regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
cpoc
Cavia porcellus (domestic guinea pig)
Pathway
cpoc03013
Nucleocytoplasmic transport
cpoc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cpoc00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
100713813 (Upf1)
03015 mRNA surveillance pathway
100713813 (Upf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpoc03019
]
100713813 (Upf1)
Enzymes [BR:
cpoc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
100713813 (Upf1)
5.6.2.5 RNA 5'-3' helicase
100713813 (Upf1)
Messenger RNA biogenesis [BR:
cpoc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
100713813 (Upf1)
mRNA cycle factors
Common to processing body (P body) and stress granule
100713813 (Upf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
DEAD
Helicase_RecD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
100713813
NCBI-ProteinID:
XP_013002977
Ensembl:
ENSCPOG00000025463
LinkDB
All DBs
Position
Unknown
AA seq
1117 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGPGGGGAGV
PGGAGAGGAAGQLDAQVGPEGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLPIH
ACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVL
ECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSW
LVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQ
YQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDE
ICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFD
RMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIVKCQLPKRFTAQGLPDLNHSQVYAVKT
VLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKV
VRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRT
AERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVG
DHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSL
QNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLL
KAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSC
VRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEG
PLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSSMYFQ
THDQIGMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGAPKSKAGRGGRQ
KNRFGLPGPSQGTLPSSQASQDVSSQPFSQGALTQGYISMSQPSQMSQPGLSQPELSQDS
YLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3354 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacggacccagttcgcagacgctcactttcctagacaccgaggag
gccgagctgctcggcgccgacactcagggctcagagttcgagttcaccgacttcaccctc
cccagccagacacagacgccccccggcggcccgggccctggcggtggtggcgctggggtc
ccgggcggcgcgggcgcgggcggcgctgccggacagctcgacgcacaggtgggacctgag
ggcatcctgcagaatggggctgtggacgacagcgtggccaagaccagccagctgctggcc
gagctgaactttgaggaggacgaagaggacacctattacacgaaggacctccccatccat
gcctgcagttactgtggcatccatgaccctgcctgcgtggtctactgcaacaccagcaag
aagtggttctgcaatggccgcgggaacacctctggcagccacattgtaaatcaccttgtg
agggcaaaatgcaaggaggtgaccctgcacaaggacgggccgctaggggagacagtactg
gagtgctacaactgcggctgccgcaatgtcttcctgctcggcttcatccctgccaaggcc
gactcggtcgtggtgctgctgtgccggcagccctgcgcgagtcagagtagcctcaaggac
atcaactgggacagctcacagtggcagcccctgatccaggaccgctgcttcctctcctgg
ctggtcaagatcccttcggagcaggagcagctgcgggcacggcagataacggcccagcag
atcaacaaactggaggagctctggaaggaaaacccctcagccaccctggaagacctggag
aagccaggtgtggacgaggagccacaacatgtgcttctgcgctatgaggacgcctaccag
taccagaatatttttgggccactggtcaagctggaggcagactatgacaagaagctgaag
gagtcacagacacaggacaacatcacagtcaggtgggacctgggccttaacaagaagaga
atcgcctatttcaccttgcccaagactgactctgacatgcggctcatgcagggggatgag
atctgcctgcgctacaaaggggaccttgcacccctgtggaagggcatcggccatgtcatc
aaggtccccgacaattatggtgatgagatcgccattgagctccgaagcagtgtgggagca
cctgtggaggtgacgcacaacttccaggtggactttgtgtggaagtccacctccttcgac
aggatgcagagcgcgctaaagaccttcgccgtggatgagacctccgtgtctggctacatc
taccacaagctgctgggccatgaggtggaggacgtgattgtcaagtgtcagctgcccaag
cgctttacggctcaagggctccccgatctcaaccactcccaggtgtacgccgttaagact
gtgctgcagcggccactgagcctcatccaaggcccacctggcacaggcaagacggtgacc
tctgccaccatcgtgtaccacctggcccggcagggcaacgggcctgtgctcgtgtgtgcg
ccaagcaacattgccgtggatcagctgacggagaagatccaccagacggggctcaaggtc
gtgcgtctctgtgccaagagccgtgaggccatcgactcacccgtgtccttcctggccctg
cacaaccagatcaggaacatggacagcatgccggaactgcagaagctacagcagctgaag
gatgagactggagagctgtcatctgccgacgagaagcggtaccgggccctcaagcgcaca
gccgagagggagctgctcatgaatgctgatgtcatctgttgcacctgcgtgggtgcgggc
gacccacggcttgccaagatgcagtttcgttccatcctgattgatgagagtacccaggcc
acggagcctgagtgcatggttcccgtggtgctgggggccaagcagctcatcctggtgggt
gaccactgccagctgggcccagtggtgatgtgcaagaaggcagccaaggctgggctatcg
cagtccctgttcgagcgcctggtggtgctgggcatccgccccatccgcctgcaggtccag
taccgcatgcaccccgcactcagcgccttcccctccaacatcttctacgagggctcgctg
cagaatggcgtcactgcagccgaccgggtgaagaagggttttgacttccagtggccccaa
cctgacaagcccatgttcttctacgtgacccagggccaggaagagatcgccagctcgggc
acgtcctacctgaacaggacagaggctgccaatgtggagaagatcaccacgaagctgctc
aaggctggtgctaagcccgaccaaatcggtatcatcacaccctatgagggccagcgctcc
tacctggtgcagtacatgcagttcagcggctcactgcacaccaagctctaccaggaggtg
gagattgccagcgtggacgccttccagggccgcgagaaggacttcatcatcctgtcttgt
gtgcgggccaatgagcaccagggcattggcttcctcaatgacccccggcggctcaatgtg
gccctgaccagagctcggtacggcgtgatcatcgtgggcaacccgaaggcactgtcaaag
cagccgctatggaatcacctgctcaactactacaaggagcagaaggtgctagtggagggg
ccgctcaacaacctgcgcgagagcctcatgcagtttagcaagccacgcaagctggtcaac
accatcaacccgggcgcccgcttcatgacaacagctatgtatgacgcacgcgaagctatc
atccctggctccgtgtatgatcgcagcagccagggccggccgtccagcatgtacttccag
acccacgaccagattgggatgatcagcgcaggcccgagccacgtggccgccatgaacatc
cccattcccttcaacctggttatgccgcccatgccgccacctggctactttggacaggcc
aacgggccagctgcaggccggggtgccccgaagagcaaggccggccggggtgggcgtcag
aagaaccgctttgggctgccaggacccagtcagggcactctgcccagcagccaggccagc
caggacgtgtcgtcacagcccttctcccagggcgcgctcacacagggctatatctccatg
agccagccgtcgcagatgagccagcctggcctgtcacagcccgagctgtcgcaggacagt
tacctgggtgacgagtttaagtcccagatcgatgtggcgctgtcgcaggactccacgtac
cagggggagcgagcctaccagcacggcggtgtgacagggctatcccagtactag
DBGET
integrated database retrieval system
