Cavia porcellus (domestic guinea pig): 100726935
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Entry
100726935 CDS
T07777
Name
(RefSeq) probable ATP-dependent RNA helicase DDX60
KO
K20103
ATP-dependent RNA helicase DDX60 [EC:
5.6.2.7
]
Organism
cpoc
Cavia porcellus (domestic guinea pig)
Brite
KEGG Orthology (KO) [BR:
cpoc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpoc03019
]
100726935
Enzymes [BR:
cpoc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
100726935
Messenger RNA biogenesis [BR:
cpoc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
100726935
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
ResIII
Helicase_C
Motif
Other DBs
NCBI-GeneID:
100726935
NCBI-ProteinID:
XP_013007133
Ensembl:
ENSCPOG00000008326
LinkDB
All DBs
Position
Unknown
AA seq
1473 aa
AA seq
DB search
MAARSDKCTMFLEHMSQYILKHLPKAEYSSLLNDFVESEFFLIDGDSLLITCICEKLLKP
GQNLHFFYLVELYLMDLINKGGQFAIVFFQDAEYTYFSAPELLPLRTALILHLQKNTHIN
VCTQFTGCLSKEWKMFLDENYPYFLVIADEGLNHLQTHLFNFFIVQSWSVRVNVVLFSGQ
TADILRLYAYFMPSVYQNQCFFKKNEKVIQNAYRTLLRQLKNHRVFALEPLFKNLTSKHM
MEEAYETVCLLQQVWPEGSDIRRVLCVTSCSLSLGMYHHFLENRKETTAKEETNNNKVTS
NCLTLQDAEDLCKLHCLSVVFLLHIPLSQRARSRFITSHWIKDTQIFFRMKKWCEYFILC
NTNVLEFWNLNLTHLSDLSDEPLLKNITFYYENENVKGLHLNLGSAIMKDYEHLWNTVSK
LVKKFKVGNPFPLRTTTLQFLKKNPSSIKDSSKEKIPNLGFIPMSCQMVDKFSGDILKDL
PFLKSDDPIVTSLVKQKEFDELVHWHSHRLLSDDYDRTKSSFEGKTKDPWVQKDLQKYHR
FQRLYGNSLDPVSSKLIVTQDIKWKKNFKEVKSKKTHETKAEIIARENKKRLCTKEEQKE
EQKWNALSSSIEEEMTQNLSSGLKNLEDFLKSCKSNSVKVRVEMVALTACLKAWKEHCQH
EGKATEDLNIAVQMMKRIHSLMNKYSELLQDVDRHLIGRCLKYLGFDELARSLYTDQDVV
DDKKNKKRYSVGIGPARFQLQHMGHYLIREERKDPDPRVQGFIPDTWQRELLDVVDNYES
AVIVAPTSSGKTYASYYCMEKVLKESDEGVVVYVAPTKALVNQVAATVQNRYTKNLPDGE
VLCGVFTREYRHDALNCQVLVTVPACFEILLLAPHRQQWVKRIRYVIFDEVHCLGGEIGA
EIWEHLLVMIRCPFLALSATISNPEHLTEWLQSIKHYWRQEDKIMEKRMASKRSAGSHAS
LSKGYVQIKQSYKVRLVLYGERYNDLEKYICSIKENDICFDHFHPCAALTIDHIERYGFP
SDLALSPRESIQLYDAMFQAWESWPQAQKLCPENFIHFKDKLIITKMDARKYEESLKAEL
KSWVKNGNIEQAKMVLKSLSPNSAYSSGNMLMKFPLLIEKLREMEKLPALIFMFNITHVE
YFAGSVYRFLKVKQKEKQSPKAHKEVHDKICRLQKLEKSIEKQKTLEEKSQKKPRILDQN
FILEAEYNCLLKSLNKSLEIPQDCTYTDQKVMDAELLKTVFDRVKFERKGAELRCLARRG
IGYHHSSMTAKEKQLVEILFRKGFIRVVTATGTLALGINMPCKSVVFAQNSVYLDALNYR
QMSGRAGRRGQDLLGDVYFFDIPLPKVEKLVKSKVPELRGQFPLKITLILRLMLLASKAD
DLEDGQAKALSVLKHSLLSFKQPRAVEMLKLYFLFSLQFLVKEGYLDREGNPTGFAGLVS
HLHYHEPSNLVFVNFLVKGLFHNLCQPTNKGVS
NT seq
4422 nt
NT seq
+upstream
nt +downstream
nt
atggcagcaagaagcgataaatgcacaatgtttttagagcatatgtcgcagtatattttg
aaacatttgccaaaggctgagtattcaagtttactcaatgattttgttgagtccgaattt
tttctcattgatggggactcattacttatcacatgtatatgtgagaaattattaaagcca
ggacagaatctccatttcttctacctggttgaactttatctcatggatcttattaataaa
ggaggacaatttgccatagttttcttccaggatgctgagtacacatatttcagtgctcct
gagctacttcctttgagaactgctttaattcttcatcttcagaaaaatacccacattaat
gtttgcactcaatttactggctgcttatcaaaggagtggaaaatgttcttggatgaaaat
tatccatatttcctggtaattgctgatgaaggcctgaaccatctgcaaacacaccttttc
aactttttcattgttcagtcttggtcagtgagggtcaatgttgtgcttttctctgggcaa
acagctgatattcttcgactgtatgcatactttatgccaagtgtgtaccagaaccagtgt
tttttcaagaagaatgaaaaggtgattcaaaatgcttatagaaccctgcttagacaattg
aaaaaccatagagttttcgcattagaacctcttttcaaaaatttaacatcaaaacatatg
atggaagaggcttatgagactgtatgtctgcttcagcaagtctggccagaaggatctgac
attcgacgagttctttgtgttacttcgtgctcactgtctttaggaatgtaccatcacttc
ttagaaaacagaaaggagactactgctaaagaggagactaacaacaacaaggtgacaagc
aattgcttaaccctgcaagatgcagaggatttgtgcaaactgcattgtctcagcgtggtt
tttcttctacacatacctctttctcagagagctcgttctagattcatcacgtcccattgg
attaaggacactcagatattctttagaatgaaaaagtggtgtgaatatttcatcctatgt
aatacaaatgttttggaattttggaatctgaatttaactcatctttctgacttaagtgat
gaacctttgctgaagaatattaccttttattatgaaaatgaaaatgtaaaaggtctacat
ttgaacttgggaagtgccattatgaaagactatgaacatctctggaatactgtgtcaaaa
ttggtaaaaaagttcaaagtgggaaacccatttcctttgagaacaaccacacttcagttt
cttaaaaagaatccatcatcaatcaaagatagctccaaggaaaagattcctaatttgggt
tttattccaatgtcatgtcaaatggttgacaaattttctggagacattttgaaagattta
ccttttctaaaaagtgatgatcctattgttacttcactggttaaacagaaggaatttgat
gaactcgtgcactggcattctcacagactccttagtgatgattatgatcggacaaaaagc
agctttgaaggaaagactaaagacccttgggttcaaaaagatctgcaaaaatatcatcgt
tttcagcgtttatatggaaattcattagacccagtgtcttcaaaactcattgtgactcaa
gacataaagtggaagaaaaattttaaagaggtgaagagcaaaaagacacatgagaccaaa
gctgaaataattgctagagagaataagaagagattatgtaccaaggaagaacaaaaagaa
gagcaaaaatggaatgctctgtcatcttctatcgaagaagaaatgacacagaatttaagc
tctggattaaagaacctggaagactttttgaagtcatgtaaaagtaactcagtgaaagtt
cgggtagaaatggtcgcattaactgcctgtttgaaagcatggaaagaacactgtcaacat
gaaggtaaagccacagaagatttaaatatagctgtccagatgatgaaaagaattcactcc
ttgatgaataaatactcagaacttttgcaagatgtagaccggcacctcataggcagatgc
cttaagtatttaggatttgatgagttggcgaggtcattatatacagatcaggatgtagtg
gatgacaagaagaataagaagaggtattcagttggcattgggccagctcggtttcaacta
caacacatgggccactatttgatacgagaggaaaggaaagatccagatccaagggtccag
ggttttattcctgatacttggcagcgagaactcctcgatgtggtggataactatgaatca
gcagtgattgttgcccccacatcctcagggaaaacctatgcttcctactactgcatggag
aaggtgctgaaagagagtgatgaaggggtggttgtatatgttgcaccaaccaaggccctt
gttaatcaagtggcagcaactgttcaaaatcgttatactaaaaatctgccagatggtgaa
gttctgtgtggtgtttttacaagggaatatcgtcacgatgcgctcaactgtcaggtgctt
gttacagtgcctgcctgctttgaaattctgctgctagctccacatcgccaacaatgggtg
aaaaggattagatatgttatatttgatgaggtccattgtcttggtggagaaattggagca
gaaatctgggagcatctccttgtcatgatccgatgcccatttttggctctgtcagctaca
attagtaaccctgaacatctcactgagtggctgcaatcaataaaacattattggagacaa
gaggacaaaataatggaaaaaaggatggcctccaaaagaagtgctggctctcatgccagt
ttatccaaaggctacgtgcaaataaagcaatcgtataaggttagacttgtgctttatgga
gagaggtacaatgatttagagaagtacatatgttccatcaaagagaatgacatttgtttt
gatcactttcacccatgtgctgcactaaccatagatcacattgaaaggtatggattccct
tctgatcttgcactttcacctcgagaaagcatccagctttatgatgccatgtttcaagcc
tgggaaagttggccacaggcccagaaattatgtccagagaacttcattcatttcaaggac
aaattaatcattacaaagatggatgctagaaaatatgaagagagcttaaaggcagaatta
aaaagttgggttaaaaatggcaatatagagcaggctaaaatggtactaaagtctcttagc
cctaattcagcttatagttcaggaaatatgttgatgaaatttccacttcttattgaaaaa
ctaagggaaatggaaaagttacctgctctaatttttatgttcaatataacacatgtagaa
tattttgctgggagtgtatacaggtttttgaaggtaaagcagaaggaaaaacagtctcct
aaagctcataaagaagttcacgacaagatttgcagacttcaaaaactagagaaatccatt
gagaaacagaagacattagaggaaaaaagccagaaaaaaccaagaatattggaccaaaat
ttcatactagaagctgagtataattgtctattgaaaagtctaaacaagagcctggaaatt
cctcaggattgcacatacactgatcaaaaagtgatggatgctgagttattgaagacagtg
tttgatcgtgtaaaatttgaaagaaaaggtgcagaactgagatgtttggcaagaaggggt
attggatatcaccacagttccatgactgccaaagaaaaacagctagttgaaattcttttt
cgaaaaggattcatcagggtggtgacagctaccggaacacttgctttaggaatcaacatg
ccttgtaaatctgtggtttttgctcaaaactcagtctatctggatgctttaaattacaga
cagatgtctggtcgtgctggaagacggggacaagacctgctaggagatgtatatttcttt
gatattccactacccaaagtagaaaaactcgtaaaatccaaagttcctgagctcagagga
caatttcctctaaagataacactgatcctgcgactcatgctgctggcttccaaggcggat
gatctggaggacggccaggcgaaggcgctgtcagtgctaaagcattcattgttgtccttc
aaacaacccagagccgtggagatgttaaaactttacttcttattttctttgcagttcttg
gtgaaagagggatatctagatcgagagggaaatcctacagggtttgctggacttgtgtca
catttgcactatcacgaaccttctaatctggtctttgtcaattttcttgtgaaaggtctt
ttccataatctttgccaaccaactaacaaaggtgtttcttga
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integrated database retrieval system
