Cavia porcellus (domestic guinea pig): 100734537
Help
Entry
100734537 CDS
T07777
Symbol
Mtrex
Name
(RefSeq) superkiller viralicidic activity 2-like 2
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
cpoc
Cavia porcellus (domestic guinea pig)
Pathway
cpoc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpoc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100734537 (Mtrex)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpoc03019
]
100734537 (Mtrex)
03041 Spliceosome [BR:
cpoc03041
]
100734537 (Mtrex)
03009 Ribosome biogenesis [BR:
cpoc03009
]
100734537 (Mtrex)
03016 Transfer RNA biogenesis [BR:
cpoc03016
]
100734537 (Mtrex)
Enzymes [BR:
cpoc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
100734537 (Mtrex)
Messenger RNA biogenesis [BR:
cpoc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
100734537 (Mtrex)
Spliceosome [BR:
cpoc03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
100734537 (Mtrex)
Complex C
U4/U6.U5 tri-SnRNP related factors
100734537 (Mtrex)
Ribosome biogenesis [BR:
cpoc03009
]
Eukaryotic type
Pre-60S particles
Helicases
100734537 (Mtrex)
Transfer RNA biogenesis [BR:
cpoc03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
100734537 (Mtrex)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
100734537
NCBI-ProteinID:
XP_003470308
Ensembl:
ENSCPOG00000009797
UniProt:
H0VFF2
LinkDB
All DBs
Position
Unknown
AA seq
1042 aa
AA seq
DB search
MADAFGDELFSVFEDESTTEPGANKDKEKEKGKWKGPTGSSEKSGKRSDGKLPSESTNSG
KNKRDTDFEGTDEPIFGKKPRIEESITEDLSLADLMPRVKVQSVETVEGCTHEVALPADE
DYLPLKPRIGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALR
EKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGS
EVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLH
KQPCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGD
QKGRKGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMV
EEVFSNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALF
ATETFAMGINMPARTVLFTNARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVD
EKMSPTVGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPG
VVEKVKNSEQQYNKIVIPNEESVVIYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLV
KVKNEGDDFGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLRCSKESLKNSATEAAKPAKP
DEKGEMQVVPVLVHLLSAISSVRLYIPKDLRPVDNRQSVLKSIQEVQKRFPDGVPLLDPI
DDMGIQDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCEKKAQIAIDIKSAKRELK
KARTVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDL
SAEQATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEETYLS
SFKPHLMDVVYTWATGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELE
NKFAEGITKIKRDIVFAASLYL
NT seq
3129 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcttttggggatgaactgttcagcgtgttcgaagacgagtcaactactgaa
cccggagccaataaagacaaagaaaaagagaagggaaagtggaaaggaccgacagggtct
tcagaaaagagcgggaaacgttctgatggtaaattaccatctgagtcaactaatagtgga
aaaaacaagagagataccgactttgaaggcacagatgaacccatttttggaaagaaaccc
aggatagaagagtcaataactgaagatctaagtttggcagatctgatgcccagggttaag
gtacagtctgttgaaactgttgaaggatgtacacatgaggttgcacttcctgcagatgaa
gattatttaccacttaaacctcgaattgggaaagctgcaaaggaatacccatttatactt
gatgcttttcaaagagaagccattcagtgtgttgataataaccagtctgttttagtatct
gctcatacttcagcgggaaaaactgtatgtgctgagtatgctattgccttggctctaagg
gaaaaacagcgtgtaatatttactagcccaatcaaggctctcagtaatcagaaataccgt
gaaatgtatgaagaatttcaagatgttggtctgatgactggagatgttaccattaatcct
acagcatcttgtctagttatgactacagagattttgagaagtatgctgtacagaggctct
gaagttatgcgagaagttgcgtgggtcatatttgatgaaattcattatatgagagattca
gagcgtggtgtggtatgggaagaaactattattttgcttcctgataatgtccactatgtc
tttctttcggctactattccaaatgcccgacagtttgctgaatggatttgtcatttacat
aaacagccctgtcacgttatttacacagattatcggcctactccattgcagcactacatt
ttcccagcagggggagatggccttcaccttgtggttgatgaaaatggtgacttcagagaa
gataattttaatactgccatgcaagtgcttcgagatgcaggagatttggcaaaaggagat
cagaaagggcgaaaaggaggaacaaaagggccatcaaatgtattcaagattgtgaagatg
attatggagagaaattttcaacctgtaattattttcagttttagtaagaaagattgtgaa
gcttatgctcttcagatgaccaaattggatttcaatacagatgaagaaaagaagatggtt
gaggaagtattcagtaatgcaattgactgtttgtctgatgaagataaaaagctccctcag
gttgaacatgtacttcctcttttgaagcgagggattggtattcatcatggtggtttactt
cctattttgaaagaaactatagaaattctcttttctgaaggattgataaaggccttattt
gcaacagagacttttgctatgggaattaacatgccagctagaactgttttatttacaaat
gcccgtaaatttgatgggaaagatttccgatggatttcctctggtgaatacattcagatg
tctggtcgtgctggaagaagaggaatggatgacagaggcattgtaattcttatggtagat
gaaaagatgagtccaacagttggaaaacagctactaaagggctcagctgatcctctcaat
agtgcttttcatttgacctataacatggtcttgaacttactgcgtgttgaagaaattaac
cctgagtacatgcttgaaaaatccttctaccagtttcaacattatagagcaattccagga
gtagtagagaaggttaaaaactcagaacaacagtataataaaatagtaatacccaatgaa
gaaagtgtagtcatctattacaagataagacaacagcttgccaaattgggtaaagaaatt
gaagaatatattcataaaccaaaatactgcttaccatttctacaaccaggtcgtttggta
aaggtaaagaatgaaggagatgactttggctggggagtagtagtgaatttctcaaaaaag
tcaaatgttaagcctaattctggtgaactggatcctttgtatgttgtagaagtacttcta
cgctgtagcaaagagagcttgaaaaattcagctacggaggctgcaaaaccagctaaacct
gatgaaaaaggagagatgcaggttgtcccagttttggtgcatctcttgtctgctatcagc
agtgttagactttatattcctaaagaccttcggccagtggacaatagacagagtgtttta
aaatcaatacaggaagttcagaaacgttttcctgatggtgttccattattggatccgatt
gatgatatgggcattcaggatcaaggactgaaaaaagtaattcagaaagtagaggctttt
gagcatcgaatgtattctcacccccttcacaatgaccctaatttggaaactgtgtataca
ctttgtgaaaaaaaagcacagattgcaatagatattaagtctgcaaagcgagaactgaag
aaagcaagaactgtcttacaaatggatgaacttaagtgtcgcaaacgtgttttaagaagg
ttgggatttgctacttcttcagatgtcatagagatgaaaggacgagtagcttgtgagata
agcagtgccgatgagctccttctaactgagatgatgtttaatggccttttcaatgacctt
tctgcagaacaagcaacagcactgttaagttgctttgtgtttcaagagaattctagtgaa
atgcccaaattaacagaacagttagcgggaccacttcgtcaaatgcaggaatgtgctaaa
agaattgcaaaagtttcagcagaagcaaaattggaaattgatgaggaaacttacctaagc
tcattcaagcctcacttaatggatgtggtatacacctgggcaacaggagctacttttgcc
catatctgcaaaatgacagatgtctttgaaggcagcataattcgttgtatgaggcgcctg
gaagaactccttcgacagatgtgtcaggctgcaaaagccattggaaacaccgaactggaa
aataaatttgctgaaggaatcaccaaaatcaagagagatattgtgtttgctgccagcctc
tacttatag
DBGET
integrated database retrieval system
