Crocodylus porosus (Australian saltwater crocodile): 109306325
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Entry
109306325 CDS
T07440
Symbol
LIG4
Name
(RefSeq) DNA ligase 4 isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
cpoo
Crocodylus porosus (Australian saltwater crocodile)
Pathway
cpoo03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cpoo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
109306325 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cpoo03400
]
109306325 (LIG4)
Enzymes [BR:
cpoo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
109306325 (LIG4)
DNA repair and recombination proteins [BR:
cpoo03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
109306325 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_IV
BRCT_2
DNA_ligase_A_C
RNA_ligase
mRNA_cap_enzyme
Ribosomal_S5_C
Tox-REase-9
SSPI
DUF2087
Motif
Other DBs
NCBI-GeneID:
109306325
NCBI-ProteinID:
XP_019385217
Ensembl:
ENSCPRG00005016668
LinkDB
All DBs
Position
Unknown
AA seq
941 aa
AA seq
DB search
MRPQPTETARTTCSGRGGEAVREKIEIMMSSTPAAQSSSKQTVASQVPFADLCSTLERMQ
KCKSRPEKTKYFKDFLDSWRKFHGALHKKEKNVTDSFYPAMRLILPQLERERMAYGIKET
MLAKLYIELLNLPKEGKDALKLLNYRTPAGSRGDAGDFAMIAYFVLKPRCPEQGKLTIKQ
VNELLDSIASNNATKRKDLVKKSLLQLITQSSALEQKWLIRMIIKDLKLGVSQQTIFSIF
HPDAAELHNVTTDLEKVCRQLHDPSVSLTDVSIALFSAFKPMLAAIANIQQIEKQMNNQH
FFIETKLDGERMQMHKDGDVYKYFSRNGYDYTQQFGPSPLEGSLTPFIHNVFKSNIQNCI
LDGEMMAYNPNTQTFMQKGNKFDIKRMVEESDLQTCFCVFDVLMVNDQKLGHEILSKRYE
IMNELFTPVTGRMHIVHKTHGSTRKEVVDALNEAIDNREEGIMVKDPMSLYKPDKRGEGW
LKIKPEYVTGLIDELDLLIVGGYWGKGLRGGMMSHFLCAVAETPPSGGKPSVFHSICRVG
SGYTMKELYDLGLKLAKHWKPYCKREPPCNILCGTEKPEVYIEPCNSVIVQIKAAEIVTS
DMYKTDCTLRFPRIEKIREDKEWHECMTLSMLEELRGKASGKLASKHLDVANNEPQEKKR
KTVPKIKKIIGIAEQFKAPDLSNVSKVSNVFEDVEFCVLTGTENHSKSDLESKIAECGGN
VVQNPGPDTYCIIAGIENVRVKNVISSNKHDVVRAEWLLQCFQTKMFVPWQPAFMIHMTP
DTKQHFAREFDCYGDSYSVDIDVAQLKEVFSRVNNSIDAKMPLEVIGELEERYSWDSHPL
SMFRRNTVYLDLYAVVNDPKTKICGTRLTIRALDFRFYGAKVVSQLKEGVSHVVMGEDRT
RVKEIKMLRRTFEKKFKILSELWVTDSIREGKLQSENQYLI
NT seq
2826 nt
NT seq
+upstream
nt +downstream
nt
atgaggccacagcccacagaaacggcccgaaccacttgctcaggacgcgggggggaggca
gtgagggaaaaaatagaaattatgatgtcatccacacctgctgcacagtcatcgtctaag
caaactgtagcatcccaagtaccttttgcagatctctgctcaactttagaacggatgcag
aaatgcaaatcccgcccagagaaaaccaagtatttcaaggattttttagattcatggagg
aagtttcatggtgccctccataaaaaggagaagaatgtcacggactctttttatccggca
atgcgacttattcttccacaactggaaagagaaagaatggcttatggaataaaagaaacc
atgcttgctaagctgtatattgaactacttaatttacccaaagaaggaaaagatgcccta
aagcttttaaattatagaacaccagctggttcacgtggagatgctggggactttgcaatg
attgcctactttgtattgaaacccaggtgcccagagcaaggcaaattgactattaaacaa
gtgaatgaacttctagattcgattgccagtaataatgctactaaaagaaaggacctggta
aagaaaagtctccttcaattaataactcagagctcagctcttgaacaaaagtggttgatc
cggatgattataaaggatctaaaacttggtgtgagtcagcaaaccatattttccattttt
catcctgatgctgccgaattacacaacgtcacgaccgatctggagaaagtttgcagacag
ctgcatgacccttctgtatctctcactgacgtttccattgcattgttttctgcctttaaa
ccaatgcttgctgctattgctaatatccagcaaattgagaagcaaatgaacaaccagcat
ttcttcatagaaactaagctagatggtgagcgtatgcagatgcacaaagatggagacgta
tacaagtatttttccagaaatggatatgattatacccagcagtttgggccgtctccccta
gaaggttcattaactccatttattcataacgtttttaaaagtaacatacaaaactgcatt
cttgatggtgaaatgatggcttacaatcccaacacacaaactttcatgcagaagggaaac
aaatttgacataaaaagaatggtggaggaatctgatctgcaaacgtgcttctgtgtgttt
gatgtgttaatggttaatgaccagaaattgggtcatgagatactaagcaaaaggtatgag
atcatgaatgagctatttaccccagtcacaggcagaatgcatattgtgcacaaaacacac
ggtagtaccaggaaagaagtggtcgatgcgctgaatgaagcaatagacaacagggaagaa
ggaatcatggtaaaagatcctatgtccctctacaagccggacaaacgtggagagggctgg
ctgaaaatcaaaccagagtatgtcactggcttgatagatgaattagatcttttaattgtt
ggtggctactggggaaaagggttgcgtggtggcatgatgtctcattttctgtgtgctgtt
gcagagactcccccttctggtggaaagccatctgtttttcactctatttgtcgtgttggt
tctggctatactatgaaggaactttatgatcttggtctgaaactggctaagcactggaag
ccttactgtaaaagagagcccccttgtaacattttatgtgggactgagaaacctgaagtc
tacattgaaccttgtaactcggtcatagttcagattaaagcagcagagattgttaccagt
gatatgtacaaaaccgactgcactttacgatttcctcgaattgagaaaataagagaggac
aaggagtggcatgaatgcatgactttgagtatgttagaagagctcagaggcaaagcatca
ggaaagctagcatcaaagcaccttgatgtagctaataatgaaccacaagaaaagaaacgg
aaaactgtgccaaagattaagaaaataattggtattgctgagcagtttaaagcccctgat
ctttctaacgtaagcaaggtgtcaaatgtttttgaagatgttgagttttgcgttctgact
ggaacagaaaaccattcaaaatccgaccttgaaagcaaaattgcagaatgcggtggcaat
gtagtacagaatcctggaccggacacttattgcatcattgcaggaattgagaatgtaaga
gtgaagaacgttatctcttccaataagcatgatgttgtgagagcagagtggcttttacag
tgttttcaaaccaaaatgtttgtaccatggcagcctgcttttatgattcacatgactcca
gatacaaaacaacattttgcacgtgaatttgactgttacggtgacagctactcggtagat
atagatgtggctcaactaaaggaagtgttctcaagagttaataatagtattgatgcaaag
atgcctctggaagtaattggtgaattggaagaacggtactcatgggacagtcatccactc
agtatgtttaggcgaaacaccgtatacctggacctttatgctgttgttaatgatcccaaa
accaagatctgtggaacaaggctaacaattagagctttggacttccgtttttatggagca
aaagttgtctcacagctaaaggaaggagtgtcccatgtagttatgggagaagatcgtacc
cgtgtgaaagagataaaaatgcttagaagaacatttgaaaaaaaatttaaaattctatct
gaactgtgggtaacagattccataagggaaggaaagctgcagagtgaaaatcagtactta
atttag
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integrated database retrieval system
