Crocodylus porosus (Australian saltwater crocodile): 109312344
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Entry
109312344 CDS
T07440
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
cpoo
Crocodylus porosus (Australian saltwater crocodile)
Pathway
cpoo03013
Nucleocytoplasmic transport
cpoo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cpoo00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
109312344 (UPF1)
03015 mRNA surveillance pathway
109312344 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpoo03019
]
109312344 (UPF1)
Enzymes [BR:
cpoo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
109312344 (UPF1)
5.6.2.5 RNA 5'-3' helicase
109312344 (UPF1)
Messenger RNA biogenesis [BR:
cpoo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
109312344 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
109312344 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
DEAD
Helicase_RecD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
109312344
NCBI-ProteinID:
XP_019393885
Ensembl:
ENSCPRG00005015727
LinkDB
All DBs
Position
Unknown
AA seq
1123 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGPGQPGPGQGPG
AAGAGQGPPGPIEAQVNGPDGILQNGAVDDNVAKTSQLLAELNFEEDEEDTYYTKDLPVH
ACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVL
ECYNCGCRNVFLLGFIPAKADSVVVLLCRLCRQPCASQSSLKDINWDSSQWQPLIQDRCF
LSWLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYED
AYQYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQ
GDEICLRYKGDLAPLWKGIGHVIKVPDSSADYGDEIAIELRSSVGAPVEVTHNFQVDFVW
KSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQ
VYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIH
QTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRY
RALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAK
QLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNI
FYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEK
ITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKD
FIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQ
KVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRP
SNMYFQTHDQIGMISAGPSHVPAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGTPKGKT
GRGGRQKNRFGIPGTSQSNLPNSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQP
ELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3372 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacggccccagctcgcagacgcttaccttcctggacacggaggag
gccgagctgctcggcgccgacactcagggctccgaattcgagttcaccgacttcaccctc
cccagccagacgcagactccgcccgggccggggcagccggggccggggcagggcccgggc
gcggccggcgcggggcagggcccaccggggcccatcgaggcgcaggttaatggacctgat
ggcatcctacagaatggtgctgtggacgataatgtggctaaaaccagccaacttctggcg
gagttgaactttgaagaagatgaagaggacacctactataccaaggatcttcctgtgcat
gcttgcagttactgtggcattcatgacccagcctgtgtggtttactgcaacaccagcaaa
aagtggttctgcaacgggcgtggcaatacgtccggcagccacattgtaaaccatctggtg
agagccaaatgcaaggaggtaactctccacaaagatgggcctcttggagagactgtcttg
gagtgttacaattgtggatgccgaaatgtgttcctccttggcttcattcctgcaaaggct
gactcagtagtagtcttgctgtgcaggttgtgcaggcaaccatgtgccagtcagagcagt
ttaaaggatattaattgggacagttcacagtggcagcctcttatccaagaccgctgcttc
ctttcctggctggtaaagattccctctgaacaagagcagctgcgagcccgtcagattaca
gctcagcaaattaacaaactggaggaactctggaaggaaaacccatctgcaacccttgaa
gacttggaaaaacctggtgttgatgaagaaccgcagcatgtcttacttcgatatgaggat
gcttatcagtaccaaaatatctttggacctttagttaagcttgaggcagactatgacaag
aaactcaaggaatcccagacccaggataacatcacagtgagatgggacctaggcttaaac
aagaagagaattgcttacttcactttgccaaagactgactcagatatgcgtcttatgcaa
ggagatgagatctgcctgaggtataaaggagacctggcccctctgtggaaaggaattggt
catgttatcaaagtcccggatagctctgcagattatggtgatgagatagccattgagctg
agaagcagcgttggagcacctgtggaggttactcataacttccaggtggattttgtttgg
aagtctacttcgtttgacagaatgcaaagtgctttaaaaacatttgcagtggatgaaact
tctgtgtctggctacatctaccacaagctgttaggtcatgaggtagaagatgtgattatt
aaatgccagctgccaaagcgttttacagcgcaaggactacctgacctcaaccattctcag
gtttatgctgtgaagaccgtcttgcagcgtcctctgagccttatccaaggtccccctggc
acaggaaaaacagtgacatcagcaacgatcgtctaccatctagctaggcagggcaatggg
cctgtgttagtttgtgccccaagtaacatagctgtggatcagctgaccgagaagattcat
cagacgggactgaaagtggttcgcctgtgtgccaaaagtcgtgaggcaatcgattctcct
gtatctttcttggcattgcacaaccagattagaaacatggacagtatgcctgagcttcag
aaactgcagcagctgaaagatgaaactggagaattgtcatctgctgatgagaagcgttat
cgtgcactgaagcgaacagcagagcgtgaattacttatgaatgcagatgttatctgctgc
acatgtgtgggagcaggtgacccgagacttgcgaaaatgcagttccgctccattttaatt
gatgaaagcacgcaggctactgaaccggagtgtatggtgccagtggttcttggagcaaag
cagctgatcctcgtcggtgaccactgccagctgggtcctgttgtgatgtgtaagaaagct
gcaaaggcaggcctgtctcagtctctctttgagaggcttgtggtgttagggatccgtcca
atccgcctgcaagtgcagtatcggatgcatcctgcacttagtgcatttccatccaacatc
ttctatgagggctctctccagaatggcgtcactgcagcggaccgtgtgaaaaagggattt
gatttccagtggccccagccagataagccgatgttcttctatgtgacccaggggcaggaa
gaaattgccagttcaggcacctcttacttgaacaggacggaagctgctaatgtggagaag
ataactacaaagctgttgaaagctggtgccaaaccggatcagattggcatcattacaccc
tacgagggtcagcgatcttacctggtgcagtacatgcagttcagcgggtccttgcatacg
aagctctaccaggaagtggaaatcgcaagtgttgatgctttccagggacgggagaaggat
tttattatcctttcttgcgtaagagccaatgagcaccaaggaattggatttttaaatgat
cccagacgtcttaacgtggctcttaccagagcaagatatggagtcattattgttggaaac
ccaaaggctctgtctaagcagcctctttggaaccacctgctgaactactacaaagagcag
aaggtgctagtagagggaccactgaataacctccgggaaagcctcatgcagttcagcaag
cctcgtaaactcgtcaataccatcaaccccggtgcccgtttcatgacaactgccatgtat
gatgcacgtgaagctattattccaggatctgtctatgacaggagcagtcaagggcgccca
tccaacatgtacttccagactcatgaccagattggtatgattagtgctgggcccagccac
gtccctgcgatgaacattcctatccctttcaatctcgtcatgccaccaatgccgccacca
ggatacttcgggcaggccaatggcccagcggcagggcgcggcacacccaaagggaagact
ggccgtggcgggcgccagaaaaatcgttttgggattcctggaactagccagtcgaacctt
cccaacagtcaagcgagccaagacgtggtgtcccagcctttctcccagggtccactgact
cagggctatatctccatgagtcagccatcgcagatgagccagccaggactctcccaacca
gaattatcacaggacagttaccttggtgatgagtttaaatctcagattgatgtggcgctg
tcacaggattctacctaccagggtgaacgtgcatatcaacacggtggagtgacgggactg
tcacagtattag
DBGET
integrated database retrieval system
