Crocodylus porosus (Australian saltwater crocodile): 109317854
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Entry
109317854 CDS
T07440
Symbol
THOC1
Name
(RefSeq) THO complex subunit 1 isoform X1
KO
K12878
THO complex subunit 1
Organism
cpoo
Crocodylus porosus (Australian saltwater crocodile)
Pathway
cpoo03013
Nucleocytoplasmic transport
cpoo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cpoo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109317854 (THOC1)
09122 Translation
03013 Nucleocytoplasmic transport
109317854 (THOC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpoo03019
]
109317854 (THOC1)
03041 Spliceosome [BR:
cpoo03041
]
109317854 (THOC1)
Messenger RNA biogenesis [BR:
cpoo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
109317854 (THOC1)
Spliceosome [BR:
cpoo03041
]
Complex C
Other components
EJC/TREX
109317854 (THOC1)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
109317854 (THOC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
efThoc1
Death
Motif
Other DBs
NCBI-GeneID:
109317854
NCBI-ProteinID:
XP_019402346
Ensembl:
ENSCPRG00005012815
LinkDB
All DBs
Position
Unknown
AA seq
656 aa
AA seq
DB search
MSPPLFSLPEARLRFTNSTRDALHNKTLKPLLNAFNQIPGSESEKKCTLDQAFRVVVEEE
IVNKALCENLLAVISLSISGVTEGICTASTPFVLLGDVLDCLPLDQCDKIFTFVEKNVTT
WKSSTFYSAGKNYLLRMCNDLLRRLSKSQNTVFCGRIQLFLARLFPLSEKSGLNLQSQFN
LENVTVFNTNEQESTLGQKHTEEKEEGLEVEEGEMGDDEAPTSCSIPIDYNLYRKFWSLQ
DYFRNPVQCYEKVSWKTFLKYSEEVLAVFKSYKLDDTQASRKKLEELKTGGEHVYFAKFL
TSEKLMDLQLSDSNFRRHILLQYLILFQYLKGQVKFKSSNYVLTDEQSLWIEDTTKAVYQ
LLSENPPDGERFSKMVEHILNTEENWNSWKNEGCPSFVKERPPDLKPIRPVRKRPAPEDF
LGRGPNKKILMGNEELTRLWNLCPDNMEACKSDSREYMPTLEEFFEEAIEQADPENMVEN
AYKAVNNSNYGWRALRLLARRSPHFFQPTNQQFKSLPEYLENMVIKLAKELPPPSEEIKT
GEDEDEEDNDALLKENNESPEVQRDKPMTGEQIESFANKLGEQWKVLAPYLEMKDRDIRQ
IESDSEDVKMRAKQLLVAWQDQEGAHAIPENLITALNKAGLNDLAESLTNDTENNS
NT seq
1971 nt
NT seq
+upstream
nt +downstream
nt
atgtcgccgccgctcttcagcctgcccgaggcgcggctgcgcttcacgaactcaacccga
gatgctctacataacaaaactctcaaacctttattgaatgctttcaaccaaattcctggg
agtgaaagtgaaaagaaatgtaccctggatcaagctttcagagttgttgtagaagaggaa
attgtaaacaaggctctatgtgaaaatctcttggctgtcatttctctttctatcagtgga
gtcacagaaggtatatgcaccgcttcaactccttttgtgctcctgggagatgttctggat
tgccttcctttggatcagtgtgacaaaatcttcacttttgtggagaaaaatgttaccaca
tggaaatcaagtacattttattcagctggaaagaattacttgctacgaatgtgcaatgat
cttctaagaagattatctaaatcacagaacacagtcttctgtggaagaatacagctgttc
ctggctaggttgtttcctctttcagagaagtcagggcttaatttacaaagtcagtttaat
ctggagaatgttacagttttcaataccaatgaacaggagagcactctgggacagaaacac
acagaggagaaagaggaaggactggaagtcgaagaaggtgaaatgggtgatgatgaagct
cctacaagttgttccattccaatagattacaacctgtatagaaaattctggtcacttcaa
gattactttaggaatccagtgcagtgctatgagaaggtctcatggaaaacttttcttaag
tattcagaagaagtcttggctgtttttaaaagctacaagttggatgacacacaggcctca
cggaagaagctagaagagctaaaaacaggaggagagcatgtgtactttgcgaagttccta
actagtgaaaagctcatggatttgcagctgagtgacagtaacttccgccgtcacattctg
ttgcagtatctgatattatttcagtatctaaaaggacaggtcaaatttaaaagttcaaac
tatgttctaactgatgaacaatccctctggattgaagatactacaaaagcagtttaccag
cttctttcagaaaaccctccagatggggaaagattctcaaaaatggtagagcatatacta
aacactgaagaaaactggaactcgtggaaaaatgaaggctgcccaagttttgtgaaagag
agaccaccagatttgaagccaataagacctgtgagaaagaggccagccccagaggatttc
ctaggaagaggaccaaacaaaaaaattttgatggggaatgaggagctcacgcgactttgg
aatttgtgtcctgacaacatggaagcttgtaaatctgacagtagggagtacatgccaaca
ctggaggagttctttgaagaagctattgagcaggcagatcctgaaaacatggttgaaaat
gcgtacaaagctgtaaacaattctaactatggatggagagcattaaggttactggcgcgc
agaagtccccacttcttccagccgacaaatcaacagtttaagagtttaccagaataccta
gaaaacatggtaatcaaattggcgaaggagctgccgcctccttctgaagaaataaaaaca
ggcgaggatgaagatgaggaagataatgatgctttgttaaaggaaaacaatgaaagtccg
gaagttcaacgggacaaacctatgacgggggaacaaattgagtcatttgctaacaagctg
ggagagcagtggaaggtgcttgctccgtacctggaaatgaaggaccgtgatataagacag
attgagtcagacagcgaggatgtgaagatgagagcaaagcaactgctggttgcctggcag
gatcaagagggggcacatgccatacccgagaacctgatcacagcactgaacaaagctgga
ttaaatgaccttgctgaaagcctaacaaatgatactgaaaacaatagttaa
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integrated database retrieval system
