Crocodylus porosus (Australian saltwater crocodile): 109323084
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Entry
109323084 CDS
T07440
Symbol
IFIH1
Name
(RefSeq) interferon-induced helicase C domain-containing protein 1 isoform X1
KO
K12647
interferon-induced helicase C domain-containing protein 1 [EC:
5.6.2.6
]
Organism
cpoo
Crocodylus porosus (Australian saltwater crocodile)
Pathway
cpoo04622
RIG-I-like receptor signaling pathway
cpoo05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
cpoo00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
109323084 (IFIH1)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
109323084 (IFIH1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
cpoo04054
]
109323084 (IFIH1)
Enzymes [BR:
cpoo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109323084 (IFIH1)
Pattern recognition receptors [BR:
cpoo04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
109323084 (IFIH1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RIG-I_C-RD
CARD_2
RIG-I_C
ResIII
Helicase_C
DEAD
CARD
SWI2_SNF2
DUF3638
DUF4611
Motif
Other DBs
NCBI-GeneID:
109323084
NCBI-ProteinID:
XP_019410037
Ensembl:
ENSCPRG00005018534
LinkDB
All DBs
Position
Unknown
AA seq
986 aa
AA seq
DB search
MEDRAQDERYLDMIACFRPRIKAGLRTGPVLDHLPELGAERDRIRAAAEQLGEPAAAELL
LRAVERGPHTPGWFAAFVTALQLGGCALAASYANPSLRDLPSAAEEAEHDLCVALLQVLY
GSLVDRLRTRPVVDSCLRAGLATEDDRERIRAVTETRGNREGARELLSTIVQKKNWFSEF
LSVLRETDHADLADYLSGNTGEHKEDEPKQPTTANEEMEVQNSMSSETAKEQKQNNEVND
ILSREDSLLETLPKNTSLVSDEDDADSRASPEPELVLRDYQMEVAKPALNGENIIICLPT
GSGKTRVAVYITKDHLDKKRRKSECGKVIVLVNKVPLVEQHFRKEFYPFLKHCYQVTRLS
GDSQMKISFPEVVRKNDVIISTAQILQNSMSNAAKEDEEGIHLSAFSLIIIDECHHTQKE
GVYNNIMRSYLKEKMKNKKLKKENKQVIRQPQILGLTASPGVGGAKNQAKAVEHILKICA
NLDACRIMTVEEHASQLTDQVKEPYKKFVIADDKRKDPFKEKIIAIMQEIHTYCQLSATS
EFGTQPYEQWVVKEEKRAAKEEKRKERVCAEHLKKYSDALQINDTIRMIDAYNHLNNFYK
EEKSKKAKIRDDDDDDDDDDDDEPVAPKQDATDTFLLNLFYEKRKQLKTIAGKPEYENEK
LTKLRNTLMEEFTKTDEARGIIFTKTRQSAYALFQWIKDNAKFEEVGIKAHYLIGAGHNS
EFKPMTQNEQREVISKFRAGNINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARG
RARADESTYVLVASGGSGAAERENVNIFREQMMYKAIQRVQRMPQEEYVNKIQGFQMQSI
MEIKMKAKREQRKIYKENPSLITFLCKNCGKLVCSGEDIQVIESMHHVNVKKEFQDLYYT
RENRTLREKHADYQTNGEIICKDCGQAWGNMMVHRGLDLPCLKIKNLVVRYKDKKTSNQL
YKKWGELPISFPDFDYADHFVSSDED
NT seq
2961 nt
NT seq
+upstream
nt +downstream
nt
atggaggaccgcgctcaggacgagcgctacctcgacatgatcgcctgcttcaggccccgc
atcaaggccggcctccgcacggggcccgtgctggaccacctgcccgagctgggcgccgag
cgggaccgcatccgcgccgcggccgagcagctcggggagccggcggcggccgagctgctg
ctgcgcgccgtggagcggggcccgcacacgcccggctggttcgccgccttcgtgaccgcg
ctgcagctcggcggctgcgccctggccgccagctacgccaaccccagcctgcgcgacctg
ccgtccgcggccgaggaggccgagcacgacctgtgcgtggcgctgctgcaggtgctgtac
ggctccctcgtggaccggctgcggacccggccggtggtcgacagctgcctgcgggcgggc
ctcgccacggaggacgacagggagcggatccgggctgttactgaaactcgtgggaataga
gaaggtgcaagggagctcctgagtacaatagtgcagaagaaaaattggttctctgaattt
ttgtctgtcctgcgtgaaactgaccatgcagaccttgcagattatttaagtggaaataca
ggagagcataaagaagatgagccaaagcaaccaacaactgcaaatgaggaaatggaagtt
caaaattcaatgtcttctgaaacggcaaaggagcaaaagcaaaacaatgaagtgaatgat
atcctgtccagggaagacagtttattagaaacacttcctaaaaatacttctctagtttca
gatgaagatgatgcagatagtagagcttccccggaaccagagctggtcctccgagattac
cagatggaggttgcaaaaccagcactgaacggagagaatattataatatgtctccctaca
ggcagtggtaaaactagagtagctgtttacattaccaaagatcacctggataagaagaga
agaaaatcagagtgtggaaaagttatagtacttgttaataaggtaccattagtggaacag
cacttccgaaaggagttctatccattcctgaagcattgctatcaagttactagattaagt
ggtgattctcagatgaagatttcattccctgaagttgtcaggaaaaatgatgtcattata
agtactgctcagatccttcagaattcaatgtcgaatgcagctaaggaagatgaagaaggt
atccatttatcagctttttctcttatcattattgatgaatgtcatcacacccagaaggaa
ggtgtctacaacaatataatgcgaagttatttaaaagaaaagatgaaaaataagaaacta
aaaaaagaaaataaacaagtgattcgacagcctcagatcctaggactgactgcttcacct
ggtgtgggaggtgcaaaaaaccaagcaaaagctgtagaacatattctgaaaatatgtgca
aatcttgatgcttgtagaataatgactgttgaagaacatgcctcccagctgactgatcaa
gtgaaggaaccatataagaagtttgtgattgcagatgataaaagaaaagacccttttaaa
gaaaaaattatagcgatcatgcaagagattcatacctattgtcaactcagtgcaacttct
gagtttggaactcagccttatgaacagtgggtagttaaagaagagaaaagagctgcaaaa
gaagagaaacgcaaagaacgtgtttgtgcagaacatttgaagaaatacagtgatgcctta
caaattaatgacacaatccgaatgatcgatgcatacaaccacctcaataacttctataaa
gaggagaaaagcaagaaagcaaaaataagggatgacgatgatgatgatgatgatgatgat
gatgatgagccagtagcaccaaaacaggatgcaactgatacatttctgttaaatttgttt
tatgaaaaaaggaaacagttgaaaacaattgctggcaagccagaatatgagaacgaaaag
ctaacaaagttgcgaaacactttaatggaagagttcacaaagacagatgaagcaagagga
attatcttcacaaaaactcgacaaagcgcatatgccctttttcagtggatcaaggacaat
gcaaaatttgaagaagtgggaattaaagctcattaccttattggtgctggacataacagt
gaattcaaacccatgactcagaacgaacaaagagaagtcatcagtaaatttcgtgctgga
aatataaacttacttattgctactactgtggctgaggaaggtctggatatcaaggaatgt
aacattgttatccgctatggtctcgtcaccaatgaaattgctatggtgcaggctcgtgga
cgagcccgagctgatgagagcacctacgtactggtggcatcaggtggatcaggagctgct
gaacgtgaaaatgtcaatatatttcgtgagcaaatgatgtataaagccatccaacgtgtc
caaaggatgccacaggaggaatatgtaaacaagattcaggggtttcagatgcaaagtata
atggaaataaaaatgaaagcaaagagagagcagcgtaagatatacaaggaaaatccatca
ttaatcacattcctttgcaaaaactgtggcaaactagtatgctctggagaagatatacaa
gttattgaaagcatgcatcatgtcaatgttaaaaaggagttccaggacctttattataca
agagaaaatagaacactgcgagaaaaacatgctgattaccaaacaaatggtgaaattatc
tgcaaagattgtgggcaagcttggggaaatatgatggtgcaccgagggcttgaccttcct
tgcttgaaaatcaaaaatctcgtggtcagatacaaagataaaaaaacctcaaatcaactt
tacaagaaatggggagagctgccaattagcttccctgattttgactatgcagaccacttt
gtttccagcgatgaagactaa
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