Clostridium perfringens SM101: CPR_0027
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Entry
CPR_0027 CDS
T00379
Name
(GenBank) HD domain protein
KO
K03698
3'-5' exoribonuclease [EC:3.1.-.-]
Organism
cpr
Clostridium perfringens SM101
Brite
KEGG Orthology (KO) [BR:
cpr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpr03019
]
CPR_0027
Messenger RNA biogenesis [BR:
cpr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CPR_0027
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HD
tRNA_anti-codon
TraI_2
Motif
Other DBs
NCBI-ProteinID:
ABG87418
UniProt:
Q0SWU1
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All DBs
Position
34910..35881
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AA seq
323 aa
AA seq
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MEIPVKKIGEFVKGERVEGFFLLKSVTLKTTNSGGKKYLDLVLSDKTGDILGKVWEIKPE
HEELKSNTVFKIRGTVNSWQGTLQLKVEHASKVTEEDNINLDDFVQSAPYTSDEMFNTIK
DTVDNMNDIDIKNILNRVLEINKDKLMYYPAAKSNHHSIKGGLLYHITTMLKLAENICVI
YDFLNRDLVYAGVILHDMAKIKEMSSNEMGIVDEYTLEGTLLGHITQGIKEIEVIGKEVN
ADSKIIMLLQHMVLSHHYEPEYGSPVKPLIPEAEMLHYLDVMDARMYDMKKAIKETKENE
FSERIWSLDSRRIYNHGMYEKNN
NT seq
972 nt
NT seq
+upstream
nt +downstream
nt
atggaaataccggtaaaaaaaataggtgagttcgttaaaggagaaagagtcgaaggtttt
tttcttttaaaatcagttactttaaaaactactaattctggtgggaaaaaatatttagat
ttagttttaagtgataaaactggtgatatattaggtaaagtatgggagattaaacctgag
catgaagagttaaaaagcaatacagtatttaagattagaggtacggtgaatagttggcag
ggaactttacagttaaaagtggaacatgctagcaaagttactgaagaagataatataaac
ttagatgattttgttcagagtgcgccatatactagcgatgaaatgtttaatactataaaa
gatactgttgataatatgaatgatatagatataaagaacattctaaatagagttttagag
attaataaggataaacttatgtactatccagcagcaaagtcaaatcatcactctataaag
ggtggacttttatatcacataacaactatgttaaaattagctgagaatatttgtgtaata
tatgatttcttaaacagagatttagtttatgcaggggtaatacttcatgatatggctaaa
atcaaagagatgtcttctaatgaaatgggaatagttgatgaatatactttagaaggaact
ttacttgggcatattactcaaggaataaaggaaattgaggtaataggaaaagaagttaat
gctgatagtaagattataatgttacttcaacatatggtcttatcacatcactatgagcct
gaatacggaagtcctgttaagcctcttataccagaagctgagatgttacattatttagat
gtaatggatgctagaatgtacgatatgaaaaaggcaattaaagaaactaaggaaaatgaa
ttctcagaaagaatttggtctttagatagtagaagaatatacaatcacggaatgtatgaa
aaaaataactaa
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