Corynebacterium pseudogenitalium: KBP54_03975
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Entry
KBP54_03975 CDS
T08714
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cpsl
Corynebacterium pseudogenitalium
Pathway
cpsl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cpsl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KBP54_03975 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cpsl03400
]
KBP54_03975 (mfd)
Enzymes [BR:
cpsl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KBP54_03975 (mfd)
DNA repair and recombination proteins [BR:
cpsl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
KBP54_03975 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
AAA_22
AAA_16
MFD_D3
DUF1474
RecG_dom3_C
AAA_30
Motif
Other DBs
NCBI-ProteinID:
UUA88364
LinkDB
All DBs
Position
823386..826970
Genome browser
AA seq
1194 aa
AA seq
DB search
MALTDPKLKGLVGNIGVDSLHVTGIDQVRSWATGALARQVPVLLVTATSHEAEDLTAELQ
AMLGKGKVANFPAFETLPHERLSPAPDVVGARAKVLWEMPQVIVASARAFCQPVLPAVEP
ITVKVDTEWDFTELTEQAVNFAYEHVDMVAKRGEFATRGGIIDIFPTTAEYPVRLEFWGD
EVTDIRSFAVADQRTIEELTSVELFPARQLIIDASVAKRADELARTNPSNTTLVQLLTRI
SEHTHADGEEVLIPVLSDAKYSVLPELMPKGSIVFVSGPEKVRTRIADLEATDQEFLEAG
WEAAAMGAEGPLAVEGLDVSASSFRSFESLEVSARNAGNAWWTFAPPGMFAADDAMTLPL
EFEAAPAPKGEPKAIEQLYATLKLHVQTNGGKVAFVAPAKGTVERMAERLREHGISARIA
TPGLEPVDGAVTVYQSLSHAGLVFPGPNLVVVTETDVTGNRVGDIAGAKRRRPRRRNRVD
PLALTPGDFVVHDTHGIGKFIKMAERTIKTGDEASRREYIVLEYQPAKRGQPGDQLWVPM
ESLDLLSKYTGGEKPSLSKMGGSDWKNTKRKARAAVREIAGELIELYAKRQAAPGHAFGP
DTPWQHEMEDAFPFVETEDQLAAIEAVKEDMEKPTPMDRVIVGDVGFGKTEVAVRAAFKA
VQDGQQVAVLVPTTLLAQQHYSTFNERMDGFGVTVRELSRFTSAKEAKEIMAGLADGSVD
VVIGTHRLLQTGVFWKQLGLIIVDEEQRFGVEHKEHIKALKSHVDVLTMTATPIPRTLEM
SLTGIREMTSITTPPEDRHPVLTYVGPQEEKQVAAAIRRELLRDGQVFYIHNRVSDIEKT
ARSLRQLVPEARVVVAHGQMGEQQLEQTVQGFWNREFDVLVCTTIVETGLDIANANTLIV
ENAQNMGLSQLHQLRGRVGRSRERGYAYFLYPKEKTLTETSYDRLATIAQNNDLGAGIAV
AQKDLEMRGAGNVLGAEQSGHIAGVGFDMYVRLVGEAVETYKALMTGEVVDATDQGPKEI
RVDLPVDAHIPESYINAERLRLDVYRKLAEARDEQDLRKVAEEMIDRFGPLPTEVLRLFA
VARVRHLARTAGISDILTQGTRIKFHPVELPDSKQVRLKRLYSGANYRAAAKTLQVPMPR
EGKGINQPNLRDMELLQWVADFIADIFDAEKISVTGESDGDGGRKKKRIISVSQ
NT seq
3585 nt
NT seq
+upstream
nt +downstream
nt
atggcgcttaccgacccgaagcttaagggcttggtgggcaacatcggcgtcgactcgctg
cacgtgactggaattgaccaggttcgttcgtgggctacgggtgcgctggctcgccaggtt
ccggtgctgttggtgaccgcaacgagccacgaggcggaggatctgactgctgaactgcag
gcgatgctcggaaagggcaaggtcgccaacttccccgcttttgagacgctgcctcacgag
cggttgtcgccggcgcctgatgtcgtgggtgcccgtgcgaaggtgctgtgggagatgccc
caggtcatcgtcgcctcggcgcgcgccttctgccagccagtgttgcccgcggtggagccg
attacagtgaaagtcgataccgagtgggacttcacggagctgaccgaacaagccgtcaac
ttcgcctacgagcacgtcgacatggtggcaaagcgcggggagttcgccacgcgcggtggc
atcatcgatatctttccgaccaccgccgagtacccagtgcgcctcgagttctggggcgac
gaagtcaccgacatccgaagcttcgccgtcgccgaccagcgcaccatcgaggagctcaca
tccgtcgagctttttccggcgcgccagttaattatcgacgccagcgtggccaaacgcgcc
gatgagcttgcccgcacgaacccgtcgaataccacgctggtgcagctgctcacgcggatc
tctgagcacacccacgccgatggggaagaggtactcatcccggtgctcagcgacgcgaag
tactcggtgctgccggagctcatgccgaagggcagcattgtgttcgtctctgggcctgaa
aaggtgcgcacccgtatcgcggacctcgaagccacggaccaggaattcttggaagctggg
tgggaggccgcggcgatgggtgcggagggcccgcttgctgtggaggggctggacgtatcg
gcgtcctcgttccgttcgttcgagtcgttggaagtgtcggcacgcaacgcgggcaacgcg
tggtggacattcgcacctccaggcatgtttgccgccgatgatgcgatgacgctgccgctg
gaattcgaggctgcacccgcaccgaagggcgagcccaaagcaattgagcagctctacgcg
acgttgaaactgcacgtgcaaaccaacgggggcaaggtagcgttcgtggcgccagcgaag
ggcaccgttgagcgcatggcggagcgactgagggagcacggtatctcggcgcgcatcgcc
acccctgggttggaacccgtcgatggcgcggtcacggtctaccagtccctttcacatgca
ggtctcgtgttccccggacccaacctcgtggtagtgacagaaaccgacgtgaccggcaac
cgcgtcggcgacatcgctggcgcgaagcggcgccgcccgcggcgccggaaccgggtggac
ccactcgcgctgactcccggtgattttgttgtgcatgacacgcatggcatcggcaagttc
atcaagatggccgagcgcaccatcaaaaccggtgacgaagcctcccggcgcgagtacatc
gtgttggaataccaaccagctaagcgcggccagcccggcgatcagctctgggtgccgatg
gaatccctcgacctgctgagcaaatacaccggcggcgagaagccttcgctgtccaagatg
ggcggctccgactggaagaacaccaagcgcaaggcgcgcgccgccgtacgtgagatcgcc
ggcgaactcattgagctttacgctaagcgtcaggccgcgccgggccacgctttcggccca
gacacgccgtggcaacacgagatggaggacgcgttcccgttcgtagaaacggaggaccag
ctcgctgccattgaggcggtcaaggaggacatggagaagccgacaccgatggaccgcgtg
atcgtcggtgacgtgggattcggaaagaccgaggttgctgttcgcgccgcgttcaaggca
gtgcaagacggacagcaggtggcggtgcttgtgccgacgacgcttcttgcccagcagcat
tactccacgttcaacgagcgcatggacggcttcggggtcaccgttcgcgagctgtcgcgc
tttacttcagcgaaggaagctaaggagattatggcagggttggcggatggttccgtcgac
gttgtgatcggcacacaccgtctgctgcagacgggcgtgttctggaagcagcttggcctc
atcattgtggatgaggagcagcgcttcggcgtagagcacaaggagcacatcaaggccctg
aagagtcacgtcgacgtgctcacgatgaccgcgacgccaatcccgcggaccctggagatg
agcctgacgggcatccgcgagatgacctcgatcacgactcctccggaggaccgccacccg
gtgctgacctacgttggcccgcaggaagagaagcaggttgcggcagctattcgacgcgaa
ctgctccgcgacggccaggtgttttatatccacaaccgcgtttccgatattgagaagacg
gcgcgctccctgcggcaactcgtacccgaggcccgcgtcgtggtcgcgcatgggcagatg
ggtgagcagcagcttgagcagacagtccaagggttttggaaccgcgaattcgacgtgctt
gtctgcaccaccatcgtggagaccggcctggacatcgccaacgctaacaccctgatcgtg
gagaacgcgcagaacatgggtctgagccagctgcaccagctgcgcgggcgcgtcgggcgt
tcccgcgaacgcggctacgcgtacttcctgtacccgaaagagaagacactcaccgaaacg
tcctacgaccgacttgcgaccatcgcacagaacaacgacctcggcgccggcattgctgtc
gcgcagaaggacctggagatgcgcggtgccggcaacgtgctcggcgcggagcagtccggc
cacattgcaggtgttggcttcgacatgtacgtccggctggtcggggaggccgtcgaaacg
tacaaggcgctcatgaccggcgaagtcgtcgacgcgacagaccagggcccgaaggagatc
cgagtggatctgcctgtcgacgcccacatccccgaaagctacatcaacgccgagcgcctg
cgcctggacgtgtaccgaaaacttgccgaggcccgcgatgagcaggacctgcgcaaggtt
gccgaggaaatgatcgaccgcttcggaccacttccgaccgaggtcttgcgcctcttcgcg
gttgcacgcgtgcgccacttggctcgaactgctggaatctcggatatcttgactcaaggc
acgaggatcaagttccaccccgtggagttgccagactcgaagcaagtcaggttgaagcgc
ctgtactcgggagcgaattaccgtgctgcggcaaagacactgcaggtaccaatgccacgt
gaaggcaaaggcatcaaccagccaaacctgcgcgacatggagctgctgcagtgggtcgcc
gacttcatcgcggacattttcgatgccgagaagatctccgttactggtgagtccgatggc
gacggtggcaggaaaaagaaacgcatcatcagtgtgagccagtag
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