Corynebacterium pseudopelargi: CPPEL_07570
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Entry
CPPEL_07570 CDS
T07012
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cpso
Corynebacterium pseudopelargi
Pathway
cpso03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cpso00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CPPEL_07570 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cpso03400
]
CPPEL_07570 (mfd)
Enzymes [BR:
cpso01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CPPEL_07570 (mfd)
DNA repair and recombination proteins [BR:
cpso03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CPPEL_07570 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
AAA_22
UB2H
RecG_dom3_C
DUF3638
Motif
Other DBs
NCBI-ProteinID:
AZA09623
UniProt:
A0A3G6IVK6
LinkDB
All DBs
Position
complement(1592130..1595885)
Genome browser
AA seq
1251 aa
AA seq
DB search
MAQQPAMLAGLLKVAATDPKLKGMLAHVGEPTLHITALEQVRPWAVAALAHRAPVLVVTP
TGRDAEDLTAELKAMLGERVAWFPAWETLPHERLSPAADVIGQRAKVLSHLDELSVIVTA
ARGFCQPLLAENPGRSPLVIKAEQEYDFDALRHELVHRAYSHVDLVAKRGEFATRGGILD
IFPTTAEQPVRIEFWGDEVSEIREFSVADQRAFQGMTLEAVEIFPARELLINQEIAARAE
ALALEHQGNPTLQELLSTIAEGQPAAGMEALIPALVGTPMVSLPELMPAHTHVVVMDPER
IRRRIEDLKATDAEFLAAGWEAAAMGADGPVAAQGLDLEASSYRSYEALEVAARNADLPW
WTFAPPGMFGADEQATLPLEFEPGPTPRGDLAKIEEMMALLLAHTQAGGRAAFIAPAQGA
IKRMQQRFAEQGIPSKVATPGWQPSAGEVTLYQALSHAGLIFPKVRKVAGAEALPLVVIT
ETDLTGNRVGDIAGAKRRPAKRRNRVDPLALKAGDYVVHETHGIGRFVTMTERTISTGDE
TSRREYIVLEYAPSKRGQPADQLFVPMDALDMLSKYVGGEKPTLSKMGGSDWKNTKKKAR
AAVREIAGELVELYAKRQAAPGHAFAPDSPWQRELEDNFPFVETEDQMLAIDAVKEDMEK
SSPMDRVVVGDVGYGKTEVAVRAAFKAVQDGKQVAVLVPTTLLAQQHLSTFEERMAGFPV
TIRGLSRFSSQADAKATLKGLSDGTIDIVIGTHRLLQTGVQWKNLGLVVVDEEQRFGVEH
KEHIKALRSHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPQDRHPILTYVGTYEEKQV
AAAIRRELLRDGQVFFVHNKVATIEKKAKELRDLVPEARIVVAHGQMGEEQLEQTVQGFW
NREYDVLVCTTIVETGLDIANANTLIVENAHHMGLSQLHQLRGRVGRSRERGYAYFLYPK
GQTLSETSYDRLATIAQNNDLGAGMAVAMKDLEMRGAGNVLGAEQSGHIAGVGFDLYVRL
VGEAVEAFRAMADGKVVDASEQGPKEIRIDLPVDAHIPEDYIAAERLRLEVYRKLAAAAT
DADIQAVIEEMEDRYGQVPEPVSRLLAVARLRLLARSAGISDIGMQGTRIKVHPVELKDS
QQVRLKRLAPSATYRAAAKAIQLSMPKEGPNINDKQLRDVALLQWVADFIAAMFEVDRVS
VSGATLEPSLVVAGTPAANAPAAPRRRRVVSSDDFDEEERREARRKKFRLR
NT seq
3756 nt
NT seq
+upstream
nt +downstream
nt
gtggctcagcagccagcaatgcttgcaggcctacttaaagtagccgccaccgacccgaaa
cttaaaggcatgctcgcccatgtaggcgagcccaccttgcacatcaccgcgctcgaacag
gtccggccctgggcggtagcagcgctggctcaccgcgccccggtgctggtggtcacccca
accggacgcgatgcagaagacctcaccgccgaactcaaagccatgctcggcgaacgcgtg
gcatggtttccagcctgggaaacactgccgcatgagcgccttagccccgcagcagacgtg
attggccaaagagccaaggtgctttcgcacctggatgaattatcggtgatcgttaccgca
gcgcgcggcttttgccagccgcttttagccgaaaacccagggcgtagcccgctggtgatc
aaagcagaacaagaatatgactttgatgcgctgcgccatgaactcgtccaccgcgcctac
tcccatgtagacctggtagcaaagcgaggcgaatttgccacacgcggcggcatcttagac
attttccccaccaccgctgagcagccggtgcgcatcgaattctggggcgatgaggtcagc
gaaatccgcgagttctccgtggctgatcagcgagccttccagggcatgactctggaggcg
gtagagatcttcccggccagagagctgctgattaaccaagaaattgccgcccgcgccgag
gcccttgcccttgaacaccagggcaaccccaccttgcaggagctgctgagcaccattgcc
gaaggccaacccgccgcagggatggaagcgctgattcccgccttggtgggtacacccatg
gtgagcctgccagaactcatgcccgcacatacccatgtggtggtgatggatccggaacgt
attcgccggcgcattgaagatctcaaagccaccgacgccgaattcctcgccgcaggttgg
gaggctgccgctatgggggcagatggcccggtggcagcccaaggccttgacctggaggcc
agctcctatcgcagctatgaggccctagaagtagcagcccgcaatgcagatctgccgtgg
tggaccttcgcgcctccggggatgttcggggccgatgaacaagccaccttgccactggaa
tttgagccagggcctaccccgcgaggcgatctagccaagatcgaagaaatgatggcgctg
ctgcttgcccacacccaggcaggcgggcgcgcagcctttattgctcctgcccaaggtgcg
atcaagcgaatgcagcagcgctttgcagagcagggcattccaagcaaggtggcaacacct
ggttggcaaccttctgccggtgaggtgaccttgtatcaggcactcagccatgccgggttg
atctttcctaaggtgcgaaaggtagccggggcagaggcgctgcctttggtggtgattacc
gaaacggacttaacaggcaatcgcgttggtgatattgccggggcaaagcgcaggccagcc
aagcgccgtaatcgtgtggaccctttggccttaaaggccggcgactatgtggtgcatgaa
acccatggcattggtcgatttgtcaccatgaccgagcgcaccattagcactggtgatgaa
accagccggcgtgaatacatcgtgctggaatatgccccctccaagcgtggccaaccggca
gatcaactctttgtaccaatggatgccctagacatgctgagcaagtatgttggcggcgaa
aagcccacgctttcgaagatgggtggctccgattggaagaacaccaagaagaaagcacgc
gcggctgtccgcgaaatcgccggcgaattagtcgagctctacgccaagcgccaggcggcc
cccgggcatgcctttgcacccgatagcccctggcagcgcgaattggaagataacttcccc
ttcgtagaaaccgaagatcagatgctggcgatcgacgcggtaaaagaggatatggagaaa
tcctcgcccatggaccgcgtggtggtaggcgatgtgggctacggcaaaacagaggtggcg
gtgcgcgcagcctttaaggcggtgcaagacggcaaacaggttgctgttttggtgccaacc
accttgcttgcgcagcagcacttgagcaccttcgaagaacgcatggccggtttcccggtg
accatccgcggcttgagtcgtttttcttctcaagcagatgccaaggccacgctcaagggc
ttaagcgatggcaccatcgacatcgtcatcggcacgcaccggctgcttcaaaccggcgtg
cagtggaaaaacctcggcctggtcgtggtggatgaggaacagcgcttcggtgtggaacac
aaagagcacatcaaggccttgcgcagccacgtcgacgtgctcaccatgtcggccaccccg
atcccgcgcaccctggaaatgtcgatggctgggatccgagagatgtctacgatcctcacc
ccgccgcaggatcgccaccccatcttgacctatgtgggcacctatgaagaaaagcaggtg
gcggcagccattcgccgcgaattgcttcgagatggccaggtgtttttcgtacacaacaag
gtggccaccattgaaaagaaggccaaagagcttcgcgatctcgtcccagaggcccgcatc
gtggtagcccacgggcagatgggagaggagcaactcgaacaaacggtgcagggcttttgg
aaccgcgaatacgacgtgctggtgtgcaccaccatcgttgaaacgggtttggatattgcc
aacgccaacaccttgatcgtagaaaacgctcaccacatgggtctatcgcagctccaccaa
ttgcgtggccgcgtgggtcgatcccgcgaacgtggctatgcctactttttgtacccaaag
ggccaaaccttaagcgaaacctcctatgatcgcctcgccaccatcgcccaaaataatgac
ctcggcgctggcatggccgtggccatgaaggacctcgagatgcgcggcgccggcaatgtc
ttaggtgccgagcaatccggccacatcgccggggtgggcttcgacttatatgtgcgcctg
gtgggcgaagcagtagaggcattccgcgccatggccgacggcaaggtggttgatgccagc
gaacaaggcccgaaggaaatccgcatcgatctacccgtcgatgcccacattcccgaggac
tatattgccgccgagcgcctgcgcctggaggtgtataggaaactggccgcggctgccaca
gacgccgatattcaggccgtgatcgaggagatggaagatcgctacggccaagtacctgag
cctgtgtcgcgccttttggccgttgcacgtctacgcctgctggcccgcagtgctggcatt
agcgatattggcatgcaaggcaccaggatcaaggtgcacccggttgagttaaaagactcc
cagcaggtgcgcctgaagcgtttggcaccatcggcgacctatcgcgcggccgcgaaagcc
atccagctcagcatgcccaaggaggggccaaatattaacgataagcagcttcgcgacgtc
gccctgctgcagtgggtagccgatttcatcgccgcgatgttcgaagttgatcgggttagc
gtcagtggcgcaacccttgagccctcgctcgtggtggcggggacaccggctgccaatgcc
cccgctgcgccaaggcgcaggagggttgtaagcagtgatgatttcgacgaggaggagcgt
cgagaagcaagaaggaagaagttccgactgcgctag
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