Cryptosporidium parvum: cgd5_2070
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Entry
cgd5_2070 CDS
T00168
Name
(RefSeq) SPAC694.02. SKI family SFII helicase
KO
K20103
ATP-dependent RNA helicase DDX60 [EC:
5.6.2.7
]
Organism
cpv
Cryptosporidium parvum
Brite
KEGG Orthology (KO) [BR:
cpv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpv03019
]
cgd5_2070
Enzymes [BR:
cpv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
cgd5_2070
Messenger RNA biogenesis [BR:
cpv03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
cgd5_2070
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
ResIII
Helicase_C
DUF2790
Syntaxin-6_N
AAA_22
Motif
Other DBs
NCBI-GeneID:
3373261
NCBI-ProteinID:
XP_626147
ApiDB_CryptoDB:
cgd5_2070
UniProt:
Q5CRN9
LinkDB
All DBs
Position
5:complement(436753..443124)
Genome browser
AA seq
2123 aa
AA seq
DB search
MDDESLGSCKSFSKHIKDFSAVQNSMKNYGAPSEMVDGSEANFSKDLGILQHYSNNDSIL
NEKLNELMGIFKKREFSDSQLAIKESKRMIGEILKWYFGMSHVSLNDITPDISDAENVFV
SVDGLLINLYYSFGFEVDSNNSPQTLPYIYLFERFMNYLIEAGTKRIILIFLDSFTDVLE
KINPGLPLLRESLILHSKLNPEIFNAYHFTSWLSEDFQEFLKELEPSIFLIEDGSSISNL
ESLEVKHRHQFIQEVSDENNESIDEYNFEDLDEVDISTSLLSFALEMLSYSNIAIFHKME
RKGQRITAFTYSSAIEPRFTEANKGIMRQAAQSKTRDEMRLLSDANEDFVTCDGEVDNHL
HLKDHEYNIAKEFKSSENDLFTQLVKSLIHNSISEEDLELSKSDDAILHNIKLILLFSKV
TLLSGYLRSHKLSYLDRHYISNSMLEFKKCLESKLEQDDFDNEGWEFGATILKSLESLFI
SESMKQLRSIINHFEEIKPSINKGQLISNVCDLNDPLLLEFLFYIVGYTGLKEENIRTSL
FLEIIGLESSDQSKLEDLWNKISLISEPFFPLSFSGNLNRYVTEDNDKRVLSLFGETVLS
REKLSTQRNTSVSNVGLLPINSKFVVRVMSELGVGISDMGQIKGTTIESDDKTVSQNEYL
NQVIQISGIRDVASWEIDRPQETRPNSKQEYSGGKEGSSVKLPADLEKKRQLRDNQRKQQ
FWFNLGQILTGNDKLQQTIVVNPFHVWNKLSAKEADKERNSSGPSSSSKAEEIRRKNEEA
KLTKMRQDDENQLKYHEQKLSLILSKGDPDTFMLSVYDMLIGIPRKTNEFGRFRGLSKLF
KLPKSRSKILIRTLQTCISVLRSFKSSTLPEVSHMVKARLAVCMTFRLAIETFNQYYSYF
DKTDLFEVAKILHSLGFMSSASNLVESYKYKMELDIRRMLDKTSSSNDDSKGKGSDKNKK
SQGGKKPTQKKDKKSGSDHATFPEDTNYSEYQNVYLYAKKHLEELKQSGKSGKSEKIHLC
VQDGCESSFQLRYMGADFERSTGSVADPRVPFSPDYWQKQILDIIDSGDSALVCAPTASG
KTFICYYAMEQVLRFDNESVVVFIAPTKALADQVHAEIAYRFGSKTYPNHSRISLLCKLS
RDYSINIPTQCQILITLPFMLELLLMSTTYQQWVSKIKFVIFDEVHCINEAEGGVYWERI
FQLIPCPYLCLSATIGNPLAFYNWLQRIGKLPSSKVHFVTYSERYADLSTLVYDEGNLYP
LNPLSSLSYDRVLYYGLPGDFYLPPNDGLDLFLSLKELLKCNSEATKEYLAWLDPQFFFS
GTPAITKRQYRFYLSTLLAITVKLVQNNVLNKEMWLNITGNLLLNPSIRFQRQMVELSKK
NDSNLYKIIMGVENIKSLLSGITNSNDEDATEIGSLASSISQARNAIITPARPTSAYKTA
ETFLRLVRNLQQENMLPCIIFNMERSVVEHLGKSLIEKLTNDHHDKYYGSEEATNATKAI
NKRRQEQYAKDIQRRDMLLKLKTMSRQQREKQGIVIDESELQALENLQAPGDIAEEYDPD
FSFCDRKVMGGREREIQDTLYSCEGRISPIFIEGLKRGIGIHHDGLSLRYRRAVETLYRM
GYLCIIISTRTLALGVNMPCRTTVFVNDSISLTPLLYRQASGRAGRRGYDVQGSVIFWDI
SVGKRNRLLTAELPTIKGNFPVTPTTVLRTFMLFENVLNEQTKNNISKERAVITFKALVK
FYRDSLYSVDYNHDFHKKLTATQFRFIVDLLRRFHVLDNYCGCTGYAGLVSHMFEYEGTN
LLISKLIHSGVLFNYLFSEHEKNYIESSSNNELANLLKKDPVQRLLILLAHVYLTKPMTR
NSIYSIKKQIEKSSFLNLKQKISSGKIQHLLLSLPDYIQREIDEFNEIVFSNMRNSLSVT
CTDVEFDVTEFNLPLSNNNVLSQKSKLSKDSVISSGIDESIAIDNNSCIQSPFISIMGLD
DVKLKSSQQLIYGSRVQLNCTHDLLSMVKADKVILDKEKENVSIIIMLINSFLIDFYESQ
RFSEIIKNNSIASSEIFFLISDFKVLLDRFLHSFNLMELQQYQNLNITLSKKSLEFYNNV
SRLIEILQVLYNNYRIIASKNDA
NT seq
6372 nt
NT seq
+upstream
nt +downstream
nt
atggacgatgaatcgttaggctcatgtaagtctttctcaaagcacataaaggacttctcg
gcagttcaaaattctatgaaaaattatggagctccgagcgagatggtagacggttctgaa
gcaaatttttcaaaagatttagggatactgcagcattattcaaataacgactcaatactt
aatgaaaagttaaacgagcttatgggtatctttaaaaaaagagaattttcagactcccaa
cttgctattaaagaatcaaaacgtatgattggcgaaatcttaaagtggtattttggaatg
agtcatgtttcgttgaatgatattactccagatatttctgatgctgaaaatgtatttgta
agcgtagatggattactaatcaatctatactactcctttggatttgaagttgattcaaat
aattctccccaaacactaccgtatatttacctttttgaaaggttcatgaactaccttatt
gaagcaggtacaaaaaggatcattttaatttttcttgatagctttactgatgttctagag
aagattaacccaggactgccattattgagagaatccctcattcttcactcaaaattaaat
ccagagatatttaatgcataccatttcacaagttggctatctgaggatttccaagaattt
ttgaaggagcttgaacccagtatattcttgattgaagatggaagttccatttctaatttg
gaaagcttagaagtaaaacataggcatcaatttattcaagaagtatctgatgaaaataat
gaatctattgacgaatataattttgaagatttagatgaagtcgatatatctacttcacta
ctttcattcgctttggaaatgcttagctattcaaacattgctatctttcataagatggaa
cgtaaaggacaaagaattactgcatttacatattcgtctgccatcgaacctcgctttaca
gaagcaaacaaaggaattatgaggcaggctgcgcaatcgaaaacaagagacgaaatgagg
ttgttatctgatgccaatgaagattttgtaacctgtgacggagaagtagataaccatcta
caccttaaagatcatgaatataatattgccaaagaatttaaatcttcagagaatgattta
tttacccaattagttaaatcactaattcacaactcaatttcagaggaggatttggaactt
tccaagtcggatgatgcaattctacacaatattaagctaattctccttttttctaaagta
acactattgtctggatatctaagaagccataaattgagttacttagataggcactatatt
tccaattccatgctcgagtttaaaaagtgtctagaatccaaattagaacaagatgatttc
gacaatgaaggatgggaatttggagccacaattttaaaatctcttgaatcattatttatt
tcagaatcaatgaaacagctcagatcaataattaatcattttgaggagatcaagccatcg
ataaataaaggccaacttatctcaaatgtttgcgatctgaatgatccattattgctagag
ttcctgttttatattgtaggatacacgggcttgaaggaagaaaatatcagaacatcatta
tttttggaaattattggtcttgaatcatctgatcaaagtaaattggaagatctttggaac
aaaatttcattaatcagtgaaccatttttcccgttatcattttcaggaaatttaaataga
tatgttactgaggataatgataaaagagtgttgagcctattcggcgaaactgtgttatct
agagaaaaattaagtacccaaagaaatacgtctgtaagcaatgtaggacttttacccatt
aattccaaatttgtggtcagagtaatgtccgaactaggagtaggtatatcagatatgggg
caaatcaaaggtactactatagaatctgatgacaagactgtctcccaaaatgaatattta
aaccaagtaattcaaatttctggcatcagagatgttgcatcttgggaaattgataggcca
caagagacgcgtccaaactccaaacaagagtattcagggggaaaagaaggctcatctgtt
aaattacctgcagaccttgaaaagaaacgccagttacgtgataaccaaagaaagcaacaa
ttttggttcaacttaggtcaaatattgactggaaatgataagttgcagcaaacaatcgtt
gtgaatccattccacgtttggaacaaactttctgcaaaagaagctgataaagaaaggaac
tcttcaggcccctcatcttcttcaaaagcagaagaaatcagacgaaaaaatgaagaggct
aaattaactaaaatgcgtcaagacgatgaaaatcaattgaaataccatgagcagaagtta
tctctaattctttctaaaggcgatcctgatacttttatgctttcagtctacgatatgtta
attggaattccacgcaaaactaatgaatttgggcgttttagaggtctatcaaaattattt
aagcttccaaaatcaagaagcaaaatattgattcgaactttacaaacatgtatttcagtt
ttgcgtagctttaaaagcagtactcttccagaagtgtcacatatggtaaaggctagattg
gcagtgtgtatgacttttaggctcgcaattgaaacatttaaccaatattactcttatttc
gataaaaccgacttattcgaagttgcaaagattttgcatagtcttgggttcatgtcttct
gcctctaatttggttgagagctacaaatataagatggaattggatataagacgtatgttg
gataagactagctcttctaatgatgattctaaaggtaaggggtctgataaaaacaagaaa
tctcaaggtggaaagaagcctactcaaaagaaagacaaaaaaagtgggtctgatcatgcc
acttttccagaagatacaaactattccgaatatcagaatgtttatttatatgctaagaaa
catcttgaggagttgaaacaatcaggcaaatcaggaaaaagtgaaaagattcacttatgt
gtccaagatggctgtgaatcttctttccaattacgttacatgggagctgactttgaaaga
tccacaggtagcgttgcagatcccagagttccatttagcccagattattggcaaaagcaa
attttagatattattgactctggcgactcagcgctagtttgcgctccaacagctagtgga
aagactttcatttgttactatgcaatggaacaagttttgaggtttgacaacgaaagcgtt
gttgtttttattgcgcccaccaaagctcttgcagatcaagtacatgctgaaattgcctat
agatttggttctaaaacatacccaaaccattcaaggatttctttactttgtaaactgagc
agagattactccattaatattccaactcaatgccaaatcctaattacactaccttttatg
ttggaacttttattgatgagtacaacttaccaacaatgggtatcaaagattaaatttgtt
atttttgatgaggtccactgtatcaatgaagctgaaggaggtgtctattgggagaggatt
ttccagctgattccttgtccatatttatgtctttctgctacaattggtaacccacttgca
ttctataattggctgcaaagaattggaaagcttccctctagcaaagtccactttgttact
tacagtgaaagatatgctgatctttctacactggtatatgatgaaggtaacctatatcct
ttaaatccgctttcttcactatcttatgatagggttttatactatggccttcctggtgat
ttctatcttccaccaaatgatggtcttgatttattcctttctttgaaagagctcctcaaa
tgtaattcagaagctacaaaggaatacttggcatggcttgatcctcaattcttcttttct
ggaacaccggctatcactaagagacaatatagattttacctttcaactctattggcaata
actgtaaaattagtacaaaataatgttttaaacaaagaaatgtggctaaatataacagga
aatttacttttaaatcctagtataagatttcaaaggcaaatggttgagctatccaagaaa
aatgattctaatctatataaaattattatgggagtagagaatattaagagcctattaagt
ggaattactaactcaaatgacgaagatgctacagaaataggaagtttggctagctcaata
tctcaggctaggaatgcaatcattacccccgcaaggccaacttcagcatacaaaactgct
gaaacattcttaagattggtcaggaaccttcaacaagaaaatatgctaccatgtattatt
ttcaacatggagaggagtgttgttgagcacttggggaaatcattgattgaaaagctaact
aacgatcatcatgataaatactatgggtcagaggaggccactaatgccacaaaggccatt
aacaaacgtagacaagaacaatatgctaaagatattcaaagacgtgatatgttacttaaa
ttaaaaacaatgagtcgccagcaaagagagaaacagggtattgttattgatgagagcgaa
ttgcaagcacttgaaaacctacaagctccaggagatatagctgaagaatacgatccggat
ttttcattttgtgaccgaaaagttatgggaggaagagaacgtgaaatccaggatactcta
tattcttgtgaaggcaggatttctcccattttcattgaaggtcttaaaagaggcattgga
attcatcatgatggtttgagtttaagatacagaagagcagttgaaactctatatcgcatg
gggtatttatgtataattatttccacaagaacgttagctcttggtgtaaatatgccatgt
agaacaacagtatttgtaaatgactcaatttcattgactccacttctttatcgccaagca
tctggaagagcaggaagaagaggatacgatgttcagggctcagttatcttctgggatatt
tctgtcggaaaaagaaataggttattaacagcagagttaccaacaattaagggtaacttc
cctgttactccaactactgttttgaggacgtttatgctgtttgaaaatgtccttaatgag
cagacgaaaaataatatctctaaagaaagagcagtaattacctttaaagcgcttgtgaag
ttctacagagactcattatactccgttgactataatcacgatttccacaaaaagcttaca
gcaacacaattcagatttattgttgacctgctccgcagatttcatgtattggacaattac
tgtggatgtactggttacgcagggcttgtgtctcacatgtttgaatatgaaggtacaaat
cttcttatttccaaactaatccactcaggagtattattcaactacctatttagtgaacat
gagaagaattacattgaaagcagctcaaataatgaacttgctaatttacttaagaaagat
ccagttcaaagacttctaatactattggctcacgtatatttaaccaaaccaatgacaaga
aattctatatatagcatcaaaaagcagattgaaaaatcatcttttctcaatttaaagcaa
aagatctcatctggaaagatccaacatctccttctttcactaccggactatatccaacgt
gaaattgatgaatttaatgaaatagttttctcaaatatgagaaactccttgagtgttaca
tgcacagatgttgaatttgatgtaactgagtttaacctccctctttcaaataataatgtg
ttatcgcaaaaatccaaattaagcaaagactctgtaatatcatcaggtattgacgagtct
atagcaattgataataattcttgcattcaatcgccattcatttcaattatgggtcttgac
gatgtaaaattaaagtcatcgcagcagctaatttatggatcgagagttcaattaaattgt
acacacgacttactctcaatggttaaagcagataaagtcatattagataaagaaaaagaa
aacgtttcaataatcattatgttaatcaactcattcttaattgatttctacgagtcacaa
aggttttctgaaattattaaaaataactcaattgcatcatcggaaattttcttcctcatt
tcagattttaaagtgcttcttgacaggtttctccattccttcaatctaatggagcttcaa
caataccaaaatcttaatattactctatctaaaaaatctcttgaattctataacaacgta
tccagactaattgaaatcctacaagttctctacaacaactatagaataattgcaagcaaa
aatgatgcttaa
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integrated database retrieval system
