Lachnoclostridium phytofermentans: Cphy_0410
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Entry
Cphy_0410 CDS
T00619
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
cpy
Lachnoclostridium phytofermentans
Pathway
cpy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Cphy_0410
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpy03021
]
Cphy_0410
03019 Messenger RNA biogenesis [BR:
cpy03019
]
Cphy_0410
Transcription machinery [BR:
cpy03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Cphy_0410
Messenger RNA biogenesis [BR:
cpy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Cphy_0410
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
NACHT
AAA_22
AAA
AAA_14
AAA_25
AAA_24
ATPase_2
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
ABX40797
UniProt:
A9KHD0
LinkDB
All DBs
Position
520544..522496
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AA seq
650 aa
AA seq
DB search
MSNLYETKSLSELRDIAKEKGLKSISALRKQELIDALNALEKGQGSVASINKSTDDKPIK
LGTEEVKLATEDTKQSVENRGMESSHMQGNRNNVIRRLPEQNRQHELVKAPDQSKGNDNS
RMSESYRSNEGRNMDNRLENRNNDNKNNDNRNNENRNNENRNYENSRNYENRSNENRNNE
NRNNENRNNENRSNEMLRNYDNNRRTMDNRRPMDNRRLNENRGYNESDRVVRINPTGDIS
GNQATELGYNTTSSSDRFLSQANQQEEKLPIDMEQLDSGETKEGILEVLSDGYGFIRCDN
FLPGENDVYVSPAQIRRFNLKTGDIIVGNTRIRNQNEKFSALLYIKLINGLHPSEAVKRK
KFEDLTPIFPNERIHLETPGCQVAMRMVDLISPIGKGQRGMIVSQPKTGKTTLLKQVAKA
ITRNHPEMHLIILLIDERPEEVTDIKESIEGGNVEVIYSTFDELPENHKRVSEMVIERAK
RLVEHKKDVVILLDSITRLARAYNLTVQASGRTLSGGLDPAALHMPKKFFGAARNMREGG
SLTILATALVETGSRMDDVVFEEFKGTGNMELVLDRNLSEKRIFPAIDLPKSSTRRDDLL
LNSAEVEANYLMRKALNGLKSEDAVERIIQMFVNTKNNAEFVEMIKKTKI
NT seq
1953 nt
NT seq
+upstream
nt +downstream
nt
atgagtaatttgtatgaaacaaagtcactttctgaattgcgtgatattgcgaaagaaaag
ggtttgaaaagtattagcgcattacgtaagcaggaactgatagatgctttgaatgcattg
gagaaaggacaaggatcagttgcctccataaataaaagtacggatgataaacctataaag
cttggaacagaagaagttaaattggcaacagaggatacaaagcagagtgtagagaatcgt
ggtatggaatcttctcatatgcaaggaaatcgaaataacgtgatacgcaggctaccagag
cagaatcgtcaacatgaattggtaaaagcacctgatcaatctaagggaaatgataatagc
cgaatgagtgagagctatcgcagtaatgaaggtcggaacatggataatcgtttagagaac
agaaacaacgataataaaaataacgataatagaaataatgaaaatcgtaataatgaaaat
agaaactatgaaaatagtagaaattatgaaaatagaagtaatgaaaatagaaacaatgaa
aatagaaacaatgaaaatagaaacaatgaaaatagaagcaatgagatgctaagaaattat
gataataaccgccgtacgatggataatcgcagaccaatggataaccgcagattaaatgaa
aatcgcggatataatgaatcggatcgtgtagtcagaataaatccaacaggggatatttca
ggtaatcaagctactgagttaggctataatacaacttcctcatcggatcgttttctttca
caagcaaatcaacaggaagaaaaattgccaattgatatggaacaattggattctggtgaa
acaaaagaaggaattttagaggtattatccgatggatacggatttattcgttgtgataat
tttttacctggggaaaatgatgtttatgtttctccggcacagattagaagatttaattta
aaaactggtgatatcattgtaggaaatactagaatacgtaatcaaaacgaaaagttcagc
gctcttctttatatcaagcttattaatggattacatccttctgaagcagtaaaacggaag
aaattcgaagatttaacaccgatcttcccaaatgaaagaattcatcttgaaacgcctggc
tgtcaggtagctatgcgaatggtagacttaatttcaccaattggtaagggacaaagaggt
atgattgtatcccagccaaaaacaggtaagactaccttgttaaaacaagttgctaaggct
attacaagaaaccatcctgagatgcatttaatcattttattaattgatgagcgaccagaa
gaagttaccgatattaaagagtctatagaaggtggtaatgtagaagtaatttactccact
tttgatgaattaccagagaatcataagcgagtttcagagatggttatagaacgtgctaag
cgtctggtagagcataaaaaagatgttgttatcttattagatagtatcacaagacttgca
agagcctataacttaacggtacaagctagtggacgtaccttatccggtggtcttgaccct
gcagcacttcacatgccgaaaaagtttttcggagcagcaagaaatatgagagagggcgga
agcctcactattttggcaacagcgttagttgaaaccggtagccgtatggatgatgttgta
tttgaggaatttaagggaaccggtaatatggaacttgtattggatcgtaatttatcagag
aaacgaatcttcccagcaattgaccttccaaagtctagtacacgtcgtgatgatttatta
ctaaattccgctgaggtggaagcaaattatcttatgaggaaggcgttaaacggtcttaaa
tcagaagatgcagtagaacgaattattcaaatgtttgttaatacaaaaaacaatgcagaa
tttgtcgaaatgattaagaaaacaaagatataa
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