Corynebacterium pyruviciproducens: CYJ47_08305
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Entry
CYJ47_08305 CDS
T09618
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cpyr
Corynebacterium pyruviciproducens
Pathway
cpyr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cpyr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CYJ47_08305 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cpyr03400
]
CYJ47_08305 (mfd)
Enzymes [BR:
cpyr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CYJ47_08305 (mfd)
DNA repair and recombination proteins [BR:
cpyr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CYJ47_08305 (mfd)
BRITE hierarchy
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
AAA_22
RecG_dom3_C
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
WOT01281
LinkDB
All DBs
Position
complement(1819794..1823450)
Genome browser
AA seq
1218 aa
AA seq
DB search
MSTLSGVLDIVSADRAISGAIKSIGEEDLHLTAPEDVKPWLVGALALHTPLLVVTPSGRE
AEDLTAELKAMMGEKALFYPAWETLPHERLSPGVDIIGAQARGLHKLPTAQVVVTAARGL
AQPLVAEVEGRDPVTIKVGEDYPFDELVASLVFRAYSRVDLVAARGEFAVRGGIIDIFPT
TADNPVRVEFWGDEVTDITTFAVADQRTYQDGELDKVELYPARALPITDAVKAKAAELAR
THGGNQALAQIVGKVAEGIAADGMETLIPVLTDSPLVTIVDKLPKKAHILLVDPERIRTR
VEDLRATDTEFLEAGWELAAMGGEGPVAHKDLDLEPTSYRSLESLEVTAHTTGHPLWTLT
PPGMLVGDDAHTLPLEFTEPVRPRGDEKKITALMSQLLAHTLAGGAAAYISPQKANCARF
AEKLHERGIANVKANPGMKPVAGKVTIYQAFSHSGAVFNPQESATPLVVVTETDVTGNRV
GDIAGAKRRKAKKRNRVDPLALKAGDYVVHETHGIGRFVKMTEREVRTGEDTSRREYIVL
EYAPSRRGGPPDQLYVPMESLDLLSKYVGGEKPTMSKMGGSDWKKTKKKARGAVKEIAAE
LVDLYAKRRASPGHAFAPDSPWQAEMEDNFPYVETEDQMLAIDAVKHDMEQPVPMDRVII
GDVGYGKTEVAVRAAFKAVQDGKQVAVLVPTTLLAQQHEATFRERMDGFGVTIRQLSRFT
PDKEAKETLKGLVDGSVDVVIGTHRLLQTGVQWKDLGLVIVDEEQRFGVEHKEHIKALRA
HVDVLTMSATPIPRTLEMSMSGIREMTTILTPPQDRRPVLTYVGAQEDKQVAAAIRRELL
RDGQVFYVHNRVKSIEERARQLRELVPEARIVVAHGQMSEEQLEKTVQGFWDREYDVLVC
TTIVETGLDIANANTLIVENAHHMGLSQLHQLRGRVGRSRERAYAYFLYPKGLVLTETSY
ERLTTIAQNNDMGAGMAVAMKDLEMRGAGNVLGAEQSGHIAGVGFDLYVRLVEEAVEAFR
ALADGKPLDATDQQPTEIRVDLPVDAHIPEDYINSERLRLEIYRKLAASRTEEDLAQVIE
EMTDRFGALPEPVLRLLSVTRLRHVARRAGISDIQLAGTRVKLHPVELADSKQVRLKRLY
PGSSYRAAAKTVQVKVPKQGAQRVGDSQLRDTSVVQWVADVIASLCDQENIDVTGGAGGG
EGTTKKVISVGGGHARKK
NT seq
3657 nt
NT seq
+upstream
nt +downstream
nt
gtgtcgacgctgagcggagtactggatattgtctcagccgatcgggcgatcagtggagcc
atcaagagcatcggtgaggaggatctccatctcaccgcgcccgaggatgtcaagccgtgg
ctcgtgggggcgttggcccttcacaccccgctgctggtggtcacccccagcgggcgggag
gccgaggatctgacggcagagctcaaagcgatgatgggggagaaggccctcttttacccg
gcgtgggaaactcttccgcacgagcgtctgagcccgggggtggatatcatcggcgcgcag
gcgaggggtctgcacaagctgcccaccgcgcaggttgtggtgactgcggcccgggggctc
gcgcagccgctcgtcgccgaggtagaggggcgcgaccccgtcaccatcaaggtgggggag
gattacccttttgacgagctcgttgcatccctcgtcttccgtgcctactccagggtcgac
ctcgtggcggcccgcggtgagttcgccgtgcgtggcggcatcatcgatatcttccccaca
acggcggacaaccccgtccgcgtggagttctggggcgacgaggtaacagacatcaccacc
ttcgccgtcgccgatcagcgcacgtaccaggacggtgagctagacaaggttgagttgtac
ccggcccgggcgctgcccatcaccgacgcggtgaaagcgaaggctgccgagctcgcgcgt
acccacggcgggaaccaggcgttggcgcagatcgtaggcaaggtggcagaggggatcgcc
gccgacggcatggagacactcatcccggtgctgacggactcaccgcttgtgacgattgtg
gataagcttccaaaaaaggcgcacatcctgctcgttgacccggagcggatccgcacccga
gtggaggacctgagggccacggacacagagttcctcgaggctggctgggagctggcagcc
atgggtggcgagggtccggtggcgcacaaggatttggaccttgagcccacgagctacagg
tcactggagtcgttggaggtcacggcccacacgacgggtcacccgttgtggacgcttacg
ccccccggcatgctggtgggcgacgacgcgcacaccctgcccctggaattcaccgagccg
gtgcgcccgcggggggacgaaaagaagatcaccgcgctcatgtcgcagctgctcgcccac
accctcgctggtggggcggccgcgtacatttcgccgcagaaggcgaactgtgcccgtttt
gcggagaagctccacgagcgtggcatcgctaacgtgaaggcgaacccggggatgaaaccg
gtcgccggaaaagtaacaatttaccaggcgttttcccacagcggtgcggtgttcaacccg
caggagagcgccacacccctggttgtggtgacggagacggatgtcaccggtaaccgggtg
ggggacatcgcgggggcgaagcgtcgaaaagccaaaaagcgcaaccgggtggacccgttg
gccctcaaggcgggcgactacgtggtgcacgaaacccacggcatcggccggtttgtcaag
atgaccgaacgcgaggtgcgcaccggtgaggacacctcgaggcgcgagtacatcgtgctc
gagtacgcgccgagcaggcgcgggggaccaccggaccagctgtatgtgccgatggagtcg
ctcgacctgctgagtaagtacgtcggcggcgagaagccgacgatgtccaagatgggcggg
tcggactggaagaagaccaagaagaaggcccgcggggcggtcaaggaaatcgccgccgag
ctcgtcgatctctacgccaagcggcgggcctcgccggggcacgcttttgcgccggattcg
ccgtggcaagccgaaatggaggacaacttcccctacgtggagaccgaggaccagatgctc
gccatcgacgcggtcaaacacgacatggaacagccagtacccatggatcgcgtcatcatc
ggcgacgtgggctacggcaagacggaggtcgccgtccgcgccgcgttcaaggcggtgcag
gatggtaaacaggtcgctgtgctcgtgcccaccacccttctggcgcagcagcacgaggcg
acgttccgtgagcgcatggacggtttcggcgtcaccatccggcagttgtcccgcttcacc
cccgacaaggaggcgaaggagacgcttaaagggcttgtcgacggctcggtggacgttgtc
atcggcactcaccgtctgctccaaacaggtgtgcagtggaaggacctcgggctcgtcatc
gtggacgaggagcagcgcttcggcgtggagcacaaggaacacatcaaggcgctgcgcgcc
cacgttgacgtgctcaccatgtccgcaacgcccatcccccgcaccctggaaatgagcatg
tccgggatccgtgaaatgacgacaatcctcactccgccgcaggaccgccgaccggtgctc
acctacgtgggggcgcaggaggataagcaggtggcggcggcgatccgccgcgaactcctg
cgcgatggccaggtgttctacgttcacaacagggtgaagtccatcgaggaacgcgcccgc
cagctgcgcgagcttgtccccgaggcgcgcatcgtcgtcgcccacggacagatgagtgag
gagcagctggaaaagacggtgcaaggattctgggaccgtgagtacgacgtgctcgtgtgc
accaccatcgtggagacgggcctggacattgccaacgccaacacgctcatcgtggaaaac
gcccaccacatggggctctcccagctgcaccagctgcgcgggcgtgtggggcgctcccgc
gagcgtgcctacgcctatttcctttaccccaaggggctggtgttgacggaaacctcctac
gagcggcttaccaccatcgcgcagaacaacgacatgggagccggtatggctgtggccatg
aaagacctggagatgcgcggcgccggcaacgtgctcggcgcggagcaatcaggccacatc
gcgggagtcggcttcgacctgtacgtccgacttgtggaagaggcagtggaggcgtttagg
gcgctcgccgacggcaagcccctcgatgccacggaccagcagcccacggaaattcgcgtc
gacctgcccgtggacgcgcacattccggaggactacatcaactccgagcgactgcgcctg
gagatctaccgcaagctcgcggcaagccggaccgaggaggacctcgcgcaggtgatcgag
gagatgaccgaccgcttcggcgcgctgcctgagcccgtccttaggctcctctcggtcacg
cggctgcggcacgtggcgcgccgggcggggatctcagacattcaactcgccggcacccgc
gtcaagctgcaccccgtggagcttgccgattctaagcaggtacgcctcaagcgtctgtac
ccgggctcgtcctaccgggcggcggcgaaaaccgtccaggttaaggtgcccaagcagggc
gcgcagcgggtgggcgacagccagctgcgcgacaccagcgttgtgcagtgggtagccgat
gtcatcgcctccctgtgcgaccaggagaacatcgacgtgaccggtggcgccggtggcggc
gagggcaccacgaagaaggtgatctccgtaggcggaggacatgctcgcaagaagtag
DBGET
integrated database retrieval system
