Cherax quadricarinatus (Australian red claw crayfish): 128700054
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Entry
128700054 CDS
T09502
Name
(RefSeq) DNA ligase 4-like isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
cqd
Cherax quadricarinatus (Australian red claw crayfish)
Pathway
cqd03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cqd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
128700054
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cqd03400
]
128700054
Enzymes [BR:
cqd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
128700054
DNA repair and recombination proteins [BR:
cqd03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
128700054
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
BRCT
DNA_ligase_A_C
RNA_ligase
DNA_ligase_IV
LIG3_BRCT
PTCB-BRCT
mRNA_cap_enzyme
DUF6355
Motif
Other DBs
NCBI-GeneID:
128700054
NCBI-ProteinID:
XP_053648975
EnsemblRapid:
LOC128700054
LinkDB
All DBs
Position
67:18503365..18546940
Genome browser
AA seq
887 aa
AA seq
DB search
MSGGCSVDSIIPWAQVCRMLDKVQSAVRASKREMLQKFIKNFRECLQKKLQQDPNAPDSF
FPVLRILLPALDRSRGAYGVKERKLAELYIRILGLKKEGNDAQKLLHFRKPKSASGSETG
DFAEVAYYVLKSRCPDSGNMSLRDVDTHLTSIAENYSAKRHEEVERSLLVMLRSMTATEQ
KWLIRVLLKDMRLGIGQNAILNAWHPDAKDFYDVNNSLEKVCKTLQNPSVRLHEIEVSLL
SAFRPMLAERAIIEKVEAQMAHKAFYSETKYDGERSQIHKKGNVYKYFSRNGFDFTSNFG
GDRDCGLFTPHLHPLFPAHVKEVILDGEMVGWSKKHNRIVSKGEHMDVKNLREDGDWHVC
FCVFDIIYLNGQVMTNLPLSERLDKLRTVINPLEGRVMFSTTTLVKSKEDVVKLLNEAID
NREEGLVLKDPDSVYRPASRKGGWIKVKPEYVDSLVPELDLLIIGGYYGKGRHQGVLSHF
LLGVAVPNEEPGGKPCEFHSFCRIGSGYTAAELSDLVDKLRPNTRVGHQPRNIVVSREKP
DVWIEPVKSYIVQVRAAEIVKSDLYQAGVTLRFPRVEKVRYDKPWYDTLTTVQLDQLVKE
ASGKLATKHYIDGGDEPSAKRKSPTKAEHPSLPLHYTPAEISKVVKKDEILSGLEMCVMG
HSDEYTKQQLETMIVEHGGSFTQHPGQNTHCIITNTVSIRVKNYIQSGKHNIIRPSWIEA
CSKSSRLLPWGPLDVIHVQDKENEHMKELFDEFGDSYTEPADEKSLKRIMDNMKNESWTP
LSVDEMCKLDEQICEPGDARALFRRIKAFFCNNKEHQLAALALRLHGGSVSGTLSDATHV
VSGKESSHRPSEMHGQHLVTSDWIYTCIEKGKLQEERYFMPKIKILN
NT seq
2664 nt
NT seq
+upstream
nt +downstream
nt
atgtctggaggctgttctgtggactccatcataccatgggcacaagtttgccgcatgctt
gacaaggtccagtcagctgtgcgagcctccaaacgagaaatgctgcaaaaatttattaaa
aatttccgggagtgtcttcagaagaagttacaacaagacccaaatgcaccagatagcttc
tttcctgtgttgcggattctacttccagcactagaccgatcaagaggcgcttatggtgtc
aaagaacgcaagttagctgagctttatatccgtattcttggtctgaagaaggagggcaat
gatgcccagaagttattacattttcgaaagcccaaatcagcatctggaagtgaaactggt
gattttgctgaggtagcatactatgtgctgaagagtcgttgtcctgacagcggaaacatg
tcactgcgtgatgtcgacacacatctcacatccattgctgagaattattcagctaaaaga
catgaagaggttgagcggtcacttctggtgatgctgcgcagcatgacagccacagagcag
aagtggctcattcgtgtactgctgaaggacatgagacttggtattggccagaatgctatc
ttgaatgcctggcacccagatgctaaagatttttatgatgtgaacaacagccttgaaaag
gtgtgcaaaactctccagaatccaagtgtaaggctccacgagattgaagtttccctgtta
tctgccttccgtccaatgctggcagaacgggcaataatagagaaagtggaggctcaaatg
gctcacaaggcattttatagcgaaactaaatatgatggagaaagatcccaaatccataaa
aaggggaatgtctacaaatacttctcacgaaatggttttgattttactagtaattttggt
ggtgatagagactgtggtctgtttacaccacacctgcacccactgttccctgcacatgta
aaagaagttatactggatggagagatggtgggctggagtaagaaacacaacagaattgtc
agcaaaggtgaacacatggatgtgaaaaatttgcgagaggatggtgactggcatgtctgc
ttttgtgtctttgacataatttatctcaatggccaggtgatgactaacttacctttatct
gaacgtttggacaagcttagaactgtgatcaaccccttggaaggaagagttatgttctcc
acaacaactcttgtcaaatccaaggaagatgtggttaagcttttgaatgaggctatagac
aacagagaagaaggtctggtgttaaaagatcctgattctgtgtatcgaccagcgtcgcgc
aaaggaggatggattaaagtcaagcctgagtatgtggactccctggtgcccgagctggac
ttgctcattattggagggtactatgggaagggacgacaccaaggggtactctcacatttt
ctgcttggggttgcagttccaaatgaagagccaggtggaaagccatgtgagttccactct
ttttgccgtataggatcaggttacacagctgcagaacttagtgatcttgtagacaagctt
aggcccaataccagagttggccatcaacctcgaaatattgttgtgtctagagagaagcct
gatgtatggattgagcctgtcaaatcttacattgtacaggttagagcagcagaaattgta
aagagtgatttgtatcaagctggagtgacgctgaggttcccaagggttgaaaaagtacgc
tatgacaaaccctggtatgatactcttaccacagtacagttagaccaacttgtaaaggaa
gctagtggaaagttagccactaaacattacatagatggcggtgatgaaccctctgccaag
cgcaagagtccaaccaaagcagagcatccctctctgcctctacactacacaccagcagaa
atatcaaaagtggtaaagaaagatgagatactttcaggcctggaaatgtgtgtgatgggg
catagtgatgagtatacaaagcagcaactggaaacgatgatagttgaacatggaggctct
ttcacccaacacccaggtcagaacacacactgcattattacaaacactgtatcaatacgt
gtgaagaactacatccagtcaggtaaacacaacattatacgaccttcttggattgaggca
tgttcaaaaagcagtcgtttattgccctggggtcccttagatgtgatacatgtacaagat
aaggaaaatgagcacatgaaagaattgtttgatgagtttggagacagctatactgaacca
gcagatgagaagagcctcaaaagaattatggacaacatgaagaatgagtcgtggaccccc
ctgtcggtagatgaaatgtgtaagctggatgaacaaatatgtgaaccaggagatgcacga
gctctcttcagacgcataaaggcatttttttgtaataataaagaacatcagcttgctgca
ctcgcactgaggcttcatggtggctcagtcagtggtaccctgagtgatgcgactcatgta
gtgtctgggaaagagagcagccatcgtccaagtgagatgcacggacaacacctggtgacc
tcagattggatttatacgtgcatagagaagggcaagctacaagaggaaagatatttcatg
cctaagataaaaattttaaattaa
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