Chenopodium quinoa (quinoa): 110687332
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Entry
110687332 CDS
T05764
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
cqi
Chenopodium quinoa (quinoa)
Pathway
cqi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cqi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110687332
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cqi03021
]
110687332
03019 Messenger RNA biogenesis [BR:
cqi03019
]
110687332
Transcription machinery [BR:
cqi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
110687332
Messenger RNA biogenesis [BR:
cqi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
110687332
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
zf_UBZ
NRho
zf-C2H2_4
Motif
Other DBs
NCBI-GeneID:
110687332
NCBI-ProteinID:
XP_021719658
LinkDB
All DBs
Position
Unknown
AA seq
938 aa
AA seq
DB search
MPSDVVPKPAAPSPILDRFRFLLSEREAQFRVSEDDGDELVCIPPPSMAEIVTFYEDVLS
ELTFNSKPIITDLTIIAGEQREHAEGIADAICARVLEVPVDQKMPSLYLLDSIVKNIGRE
YARHFASRLPEVFCEVYRQVPPNLYPSMRHLFRTWSTVFPSLVLSMIEDELQFSPRVNQP
SSNLASMRASESPRPSHGIHVNPKYLEARRQFDNSSLNNKIQLGRGASTLKSLGQKHSVG
YEEYDLYQGESTASHIDAQRFNSSAYGGRPSFPLSTDKLLPSACGPARPLSPSADEFMVS
NSPGRVFEGASPSRPGFNYGRRRGRDEETGDWQKRLRSDDSYRGFENAANYGLGNGFEHD
RPRALIDAYGHDDGQRPLNDKLPGMDRLIVNGSVNKLTESSWQNTEEEEFDWEDMSPTLA
DGKTSNVTASSLPSRGFKAIPGVGTLGSRPFDPQKSVEDGVHISSNRPFSRNEMNHSQGA
WKLPGSLSVPVPVAGRENSSQLILPVNGVPSSLSDGKPMSADHYAAVPMQNVMSRGVSSG
FNSFEARAPSPAVGQVPTSSWPSTSSHNMLPSPPLYMQPKHPRASFDYRNHSYSVLGQGN
QQFDTDDKRNLIPAKPGQRPQLSFTPLQYSTQQPGSLQQLHPPQEPRQNAVSLPPQTILP
SSLGYTPLGHGVAATNNVRNPVPGSHPYPPFQNMSNGYMHFQAPMAPLPIAPRPHPQFLP
LPQSSGPLANQPPTAGIAGLLNTGLLNSLVAQGLFPLKQTPVQDSLGVEFNPDLLKVRHE
SAIRALYEELPRQCTTCGLRFKTQEEHSKHMDWHVTKNRISKNRKHNPSRKWFVSVNMWL
SGAEALGTDAAPGFLPTESVVEKKDDEEMAVPADEDQNTCALCGEPFEDFYSDEAEEWMY
RGAVYLNAPSGSTVGVDRSQLGPIVHAKCRSDSSVAPT
NT seq
2817 nt
NT seq
+upstream
nt +downstream
nt
atgccgagcgacgtcgttccaaagccggcagctccatcgccgattctcgatcgatttcgg
tttcttctcagtgaaagagaagcccagtttagggtttccgaagatgatggagacgaactc
gtttgtattccgccgccttctatggcagagattgtgactttttacgaggatgttttgtcg
gaattaacgtttaattcgaagccaataattacagatcttacgattattgctggtgaacag
agagaacatgctgagggtattgctgatgctatttgtgctagggttttagaggttccagtt
gatcaaaagatgccctctttgtatttattggacagcattgtcaagaatatcggtcgcgaa
tacgctaggcactttgcttctcgtttgccggaggtgttctgtgaagtttatagacaagtc
cctccaaatttgtatccttcaatgcgccatctgtttagaacctggtctaccgtcttccca
tcattggttcttagtatgattgaggatgagttgcagttctctccaagggtaaaccaacca
tcttccaacttagccagtatgagggcttccgaatcccctcgaccctctcatggcattcac
gtcaatcccaagtatctggaagccagacggcaatttgataattcttcacttaataataaa
attcaacttgggagaggagcatctaccttgaagtcactgggtcagaaacattctgttgga
tatgaagaatatgatttatatcaaggagaaagcacagcctcccacattgatgctcaaaga
tttaactcctctgcttatggtggacgtccatcgtttccactatcaacagacaagttgctt
ccatctgcatgtggtccagctagacccttatcaccatcagctgacgagtttatggtgtcc
aactcaccaggtagggtatttgaaggggcatctccttctcgtccaggatttaattatgga
cgtaggagaggaagagatgaggagactggtgactggcagaaaagacttcgctctgatgat
tcctatcgtggttttgaaaatgctgcgaactatggtttaggcaatggttttgaacatgac
agaccacgggctttaattgatgcgtatggacatgatgacggacaaagacctttgaatgac
aaacttcctggtatggatcgtctaattgtaaatggttcagtgaataaacttactgaaagc
tcatggcaaaataccgaggaagaggaatttgattgggaagatatgagcccaacgttagct
gatggaaagaccagcaacgtcactgcatcttctttgccatccagaggctttaaagccata
cctggtgttggtactcttggctccagaccttttgatccccaaaagtctgttgaagatggt
gttcatatatcatccaacaggccgttttctagaaatgagatgaatcattctcaaggagct
tggaagttgcctggcagtctctctgtgcctgtacctgttgctggaagagagaatagctct
cagctgatattacctgtgaatggagtgccgtcatcattgtctgatggaaagcctatgtca
gcagaccactatgctgcagtccctatgcagaatgttatgtctagaggtgtttcttcaggt
tttaattcttttgaagcaagagctccttcacctgctgtggggcaagtgccaactagctcg
tggccttctacaagttcacataatatgctgccttcaccacctttgtatatgcagccaaaa
catcctagagcttcctttgattatagaaatcatagttacagtgtccttggtcaaggcaat
caacaatttgatactgatgacaaaagaaatctgattcctgcaaagccgggacaacggcct
cagcttagcttcacccctttgcaatattccacacaacaaccaggatcgttgcagcagttg
catccgccacaagaacctcggcagaatgcggtatcattgccaccgcagacaatactgcca
tctagtcttggatatacaccactaggtcatggggttgctgctactaataatgtgcgcaat
ccagtacctggttctcatccttatccacccttccaaaatatgtccaatggttatatgcat
ttccaagcaccaatggcaccgctccctatagcccctcgtccccatcctcaatttttacct
cttccccagagttctggtccccttgctaaccaaccaccaactgctggtatagctggttta
ctcaatactggtttacttaattctcttgttgctcaaggtttattcccattgaaacagact
cctgtacaggattctcttggagtagagtttaaccctgatcttcttaaagtgcgtcacgag
tcagccataagggctttgtatgaggaactacccagacagtgcaccacctgtggccttcgg
tttaagacccaagaagaacacagtaagcacatggattggcatgtgactaaaaatcgaatt
tcaaagaaccgtaagcacaacccatctcgtaaatggtttgtcagtgtgaatatgtggctc
agtggtgcagaagcattggggactgatgcagctcctggatttttgccaactgagagtgtt
gttgaaaagaaggatgatgaagagatggcagttccagcagatgaggatcagaatacatgt
gctttatgtggggagccttttgaagatttttacagtgatgaagctgaagaatggatgtat
agaggggctgtatacttgaatgcaccttctgggtctactgtaggtgtggacagatcacag
ttgggccctattgtgcatgcaaaatgtaggtctgattctagtgttgctccaacatga
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