Chenopodium quinoa (quinoa): 110709411
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Entry
110709411 CDS
T05764
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
cqi
Chenopodium quinoa (quinoa)
Pathway
cqi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cqi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110709411
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cqi03021
]
110709411
03019 Messenger RNA biogenesis [BR:
cqi03019
]
110709411
Transcription machinery [BR:
cqi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
110709411
Messenger RNA biogenesis [BR:
cqi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
110709411
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
Motif
Other DBs
NCBI-GeneID:
110709411
NCBI-ProteinID:
XP_021743324
LinkDB
All DBs
Position
Unknown
AA seq
1028 aa
AA seq
DB search
MEMESSRRPPFDRSNLISKKPRLAEDPTLSGRQFQQPLQRSAIGSGSGATRFRANSGDRE
SDDSGRASLQQLQQHQELVNQYKTALAELTFNSKPIITNLTIIAGENLQAAKAIAATICS
NILEVPTEQKLPSLYLLDSIVKNIGRDYIKYFAVKLPEVFCKAYRHVDPSIHAGMRHLFG
TWKGVFPPQPLQIIEKELGFSTAVNGASSGTTTSKSDSQSQRQPHSIHVNPKYLEARQRL
QQSSKMKGTYIGLSEVGSSEDAERPEKTATAGTERPWMESMDPVIKMHNVCPQRESLRES
SLPKQGGAVYGDYDIASGLSRPLSTSGGKPSERTVGQRWTGAGREGEESISGERNGYDIK
HGIPKYAAGRPASSGLPSVLKQPRIAPEISGSWKNSEEEEFMWDDLGTKVDPSAASITKK
EIWSDDPEKVEFNRHLPKWKNPVEVRSNFERELSSDSLSSEQKDQVPLGHPRSSHWKMLE
PHQADSSSPLLKQMSSHSVNGPNSAGVSSLGFSSASAGSMGRQPSPGQSVISQRPPSPSL
SKRDPRQSLVEKDHMRSSLVRSDPRVASISGKLNAGVRDKTFQGSMLNRQKLQAALQKPP
PPTTSFQQRHVPSSEQQPNSKSELTDIVQKAQQLLSSSSAKKGTSSDSLNPIAGSMQGQS
NMSSLLAAVMKSGLLSGSPVSGQMGVQPPSITALTSQSTFISTKDDTSSSPHDSTAIVSR
SKVEMPPLVAPVPSSPKSSSLAQTSNAAAVKSNPLSILSTLISKGLISAPKTDAAVAAVS
VKSDSQIQAQSPIIASVTTVTAPSVSKVSATLPKSSNEKAPLLLDEKASDAIQSNKEEKD
LIGFEFKPRVLRDLHPAVIDRLCDDLPHKCTACGLRFKLQERLARHSEWHAFKNSIPNSV
NKPSRRWYSKPVDWIVGKAGFPFGYNSTCLMEGSSRMREETEKMVPADESQCVCLLCGEL
FEDYYSQERDEWMFKGAVYLSTPSGSSEEGGSCSESDLQNLIVHANCMSGDLGRDLGSIR
GIKVEKGT
NT seq
3087 nt
NT seq
+upstream
nt +downstream
nt
atggagatggagagttctcgaagaccaccgtttgatagatcgaatttgatttcgaaaaag
ccaagattagctgaagacccaactctcagcggccggcaatttcaacaaccattgcaaaga
tcggcgattggttcgggttcaggtgcgactcgatttagagcgaattcgggcgatagagaa
tccgatgattcgggtcgtgcgtctttacagcaattacagcagcatcaggagctggttaat
cagtataagacagctttagctgagttaacctttaattcgaagccgattattacaaacttg
acgattattgcaggggagaatttgcaggctgccaaagccattgcggccaccatttgttct
aacattcttgaggttcctacagagcagaagttgccctcactttatctactggacagtatt
gtgaagaacattggtagagattacatcaagtattttgcagtaaagttacctgaggtgttt
tgcaaggcatacaggcatgtggatccttcaatacatgctggtatgaggcacctttttggg
acttggaaaggtgttttccctccccagccactgcagattattgaaaaagaactcggattc
tctactgctgtcaatggtgcatcatctggaactaccacatccaagtccgattcacagtct
cagcgtcagccacatagtattcatgtgaatccaaagtatttggaagcgagacagcgtctt
caacagtctagtaagatgaaaggaacatatattggtctctcagaggttggatcttctgag
gatgcagagagaccagagaaaactgctactgcaggaactgaaaggccgtggatggaatcg
atggatcctgtaataaaaatgcataatgtgtgtcctcaaagagaatcgttgagagaatcc
agtcttccaaagcagggaggtgcagtatatggagattatgatattgcatctggtctttca
agacctttgagcacatctggtggtaaacctagtgagaggactgtcggacagagatggact
ggtgctggcagagagggggaagaatctatttctggtgaaagaaatgggtatgatattaag
catgggattccaaagtatgcagctggcagaccagcaagtagtggtttaccttcagtgctg
aaacagccaagaatagctcctgagatttctgggagctggaaaaattctgaagaagaggag
ttcatgtgggatgatttgggcaccaaggtggatcctagtgctgcaagcatcacaaagaaa
gaaatttggtctgatgatccggagaaagtggaatttaataggcaccttcctaaatggaag
aacccggttgaagtcagatccaactttgagagagaactttcttctgatagtctttcctct
gaacagaaagatcaagtgcctcttggacatccaaggtcctcccactggaagatgctggaa
cctcaccaggctgatagttcaagtcctttgttaaagcaaatgagctctcactccgtgaat
ggtcccaactctgctggagtctctagtttgggtttctcttcagcttctgcaggatctatg
gggcgtcaaccatctccaggccaatctgtgataagccagcgtccaccttctccttcatta
tctaaaagggatcctcgtcaaagtctcgttgagaaagatcatatgagatcttccttagtt
cgatctgatcctagagttgcttctatttcagggaagttaaatgcaggggtccgtgataaa
acttttcagggctctatgcttaatcgtcaaaagttgcaagctgctctgcagaaaccacct
cctcctacaacttcttttcaacaaaggcatgtcccatcttctgagcagcagcctaattca
aagtctgagcttactgatattgtccagaaagctcagcagctgcttagttcctcctcagca
aagaaaggtacctcatcagatagtttgaatcctattgctggtagtatgcaagggcagtcg
aacatgagtagtttattggctgctgtgatgaaaagtggtttactttctggtagtcctgtt
tctggacagatgggggttcaacctccttcaattactgctctcacctcacaatcaactttc
attagtacaaaggatgatacgtcttcaagtcctcatgattcaacagctattgtctcccga
agtaaagtagaaatgcctccgctggtggctcctgttccttcatctcctaagagcagttca
ttggcacaaacatcgaatgcagcagctgtcaagtcaaacccactttcaatcttgagcaca
ttgatatcaaaggggttgatatctgcgccaaaaactgatgcagctgttgctgcagtttcc
gtgaaatctgattcccagattcaagcacaaagcccgattattgcttctgtaactactgta
acagctccatccgtttccaaagtttctgctactctacctaaatcatctaatgaaaaggct
cctttgctgctcgatgaaaaggcatctgatgcaattcaaagcaataaagaagaaaaagat
cttattggatttgaatttaaacctcgtgtgctccgggatttgcatcctgctgtaattgac
agactttgtgatgaccttccacacaagtgcactgcatgtggtcttcgatttaaactgcaa
gaaaggcttgctagacattcagagtggcacgcttttaaaaattcaataccaaattccgtg
aataagccatccaggagatggtattcaaagcctgtggactggattgtcgggaaggctgga
tttccatttggttataattccacttgtctcatggaggggtccagcaggatgagagaagag
acagagaaaatggttcctgcagatgaaagtcaatgtgtgtgtcttttatgtggtgaactg
tttgaagattactacagtcaagagagggatgaatggatgttcaagggagcagtttatttg
tctaccccttctggaagctctgaggaaggaggatcttgcagtgagagcgatttgcaaaat
ttgattgttcacgccaactgtatgtcaggtgatttaggtcgtgacttgggatctatcagg
ggtattaaagtggaaaagggtacgtag
DBGET
integrated database retrieval system
