Culex quinquefasciatus (southern house mosquito): CpipJ_CPIJ001187
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Entry
CpipJ_CPIJ001187 CDS
T01079
Name
(GenBank) conserved hypothetical protein
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
cqu
Culex quinquefasciatus (southern house mosquito)
Pathway
cqu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cqu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
CpipJ_CPIJ001187
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cqu03021
]
CpipJ_CPIJ001187
03019 Messenger RNA biogenesis [BR:
cqu03019
]
CpipJ_CPIJ001187
Transcription machinery [BR:
cqu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
CpipJ_CPIJ001187
Messenger RNA biogenesis [BR:
cqu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
CpipJ_CPIJ001187
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CFIA_Pcf11
Motif
Other DBs
NCBI-ProteinID:
EDS28699
VectorBase:
CPIJ001187
UniProt:
B0W2F3
LinkDB
All DBs
AA seq
1568 aa
AA seq
DB search
MPKIAMFYSNLAEKVLGEPALDAKPTMVTQDIDLRVPPPALLKDVVVVAVPDSVSPGIST
SAVAESLGGSSGSIVEPTSSTTVDSLSGGGATSTIKKRPSNHKYEEQPASKKSKSEKIDV
LFGAEDVDLRKLAGPLNPESILPPPPPIISTEPTNVGAAAVVELSESPERQLPSSKAALE
AVRAKIAEAAKNKDRDKLGRPLLYNKLPDDPAERRRSINQPKPMDVDLRQQQQQQQQQQL
QDEDNSQDGMNANIKTIIAQAQEQMEKGEITPEQYNILMKQVIQLNETQKIRQAQRMELM
KRSQQVGVPQQEPDEVIRIDDEKARSPLPVAEESTVPPPPQAVVNDFRGKVAPLEGPNFA
NSTAADLRQRDPRRPRDARFNPQPVVQPAPAWPNRPVQSVPAPSGLIINHRPPAPMLNPW
EKAPFSRIDQNMIPPPPIRPHYPPPIGMNNIVGGPMQTMLMPGVAKLNDSVRTINIDGIQ
REIRFYDDIAVIFMSWDEPKEIGFQKGSRMVVVDDRDSFELSFNECYKSITIEGKVYQMK
LGAPTRELYIDNSWYECYFGDPPSNITLDGITRVFKISGPAPQVKIGNSRNDLVAGKINM
IVNAETIIPVFLDSQVQMFEIQGTIHKLQFADFLLTVILDDHPYPVEFGGLPKVFKLRGK
DFYIRFTAIPKLVVAGRVYIRDMIRTPLHRDLRTPPRDQSMLPPFMPQLSNVMPSMSGPP
NHLFPAIQQQAPLIVPPMVTGLDYLTNLMPHSIPAANVSNNLTGYQIQSEDKPAAAPIMP
TPAIAAPPATNSAAIPILQNINIDELYKKIVAAGILSKSNSAPASTSTSATSVASKLDKA
LEEELEEIEPVFLNKADQLKKRQSAIVSQLFCGMQCSSCGVRFPPEQTMKYSQHLDWHFR
QNRRDRDSARKAHSRKWYYDVSDWIQYEEIEDLEEREKNWFETQQTEQTEFNGDGDTGGR
NVESPVPSCPAGSDEADKRCHMCHDEFEQFYCEDTEEWHLRNATRVEENTYHPLCYEDYK
ASLTLDETAMNATTDDADKSKIDDDVEEVKIKQEVISDADDTAREIIMDDDDDVIVLPPS
KEVVTEIPDDDDIETLDSHSTGEDGRTQSAAGGEDGGASKSAEPQIIETRIDDDLAIQEP
TIENITVNDLDESEEFRSGGPDDEGSQTSQPIKVKEEPKDEDEIDEEDAQFEDVGTLEQS
VMVEDVSKDTDTVDVEAVPSPTPALESTSQSQLKPSLDGNIELQDAPATSIITNRIKINI
TKAKTTNTSASAASSNSVSSHGGGSSIAVLVSGGGGSGGGNNNYIDSHCDDLLYSNLDDV
HGGGDNSQNSSNQLIMMMHEEELEESNKGPVTATEEEPTDLAYDLKPSLHGIEFIRQPRV
ENGLEQSGLCSIITAEYGINSESVGSVSGTTSSKSCRYCLGFSWAPSWLRCVPKRSANLR
RFMCTVSSYPEVLLEAIRSLAMSEVGWQEVRHVGKSRNQCQKWRDQRNSGPKKKVHARRT
DKVDDETAVRGLRRQRKKEKKRKHVTEFPCRRRPFAGSRGGRRIAMIIIHNLERRRRSLV
TTSLDCWF
NT seq
4707 nt
NT seq
+upstream
nt +downstream
nt
atgccgaaaatcgcaatgttttactcgaatcttgcagagaaagtgttgggtgagccggcg
ctagacgcgaagccgacgatggtcacgcaggacatcgatctgcgtgttccgccaccggcg
ctgctcaaagatgtggtcgtcgtcgcagttcccgacagtgtttcgcccggcatatcaacg
tcggcggtcgccgagtcgctcggtggtagctccggtagtatagttgaacctacctcgtcc
acgacggtcgattccctgagcggtggcggcgccacctccaccatcaaaaagcgacctagc
aatcacaagtacgaggaacaaccggccagcaagaagagcaagtcggagaaaatcgacgtg
ttgtttggcgccgaggatgtggatctgcgcaagctagctggtccgttgaatccggagtcc
attttgccgccaccgccgccgatcatttccacggaaccgacgaacgtcggcgctgcagcg
gtcgtcgagttgagtgaatctcctgagcggcagctgccttcttcgaaggccgcgctggaa
gcggttcgagcgaagatcgccgaagcggccaagaacaaggaccgcgacaagcttggtcgg
ccactgctgtacaacaagctaccggatgatcccgcagaacgtcgacgctccattaatcaa
ccgaagccgatggatgtggacctgcggcagcagcaacaacaacagcagcagcagcagctt
caggacgaggacaactcccaggacggcatgaacgccaacattaaaaccatcatcgcccag
gcccaggagcagatggaaaagggcgagataaccccagagcagtacaacatcctgatgaag
caggtcattcagctgaacgaaacgcaaaagattcgccaagcccagcgtatggaactgatg
aagcgttcgcagcaagtgggcgttccacagcaggaaccggacgaagtcatccggattgac
gacgaaaaagcgcgcagtcctttgccggtagcggaagagtcgacggtgccaccaccaccg
caagcggtggtgaacgacttccgtggcaaggttgcccctctggaggggccaaactttgcc
aattcaacggcggccgatttgaggcagcgagatccacgtcgtccgagagatgctcgtttc
aatccgcaaccggtggtgcaacccgcaccggcctggccaaatcgtccagttcaaagcgta
ccggcaccgtccggtttgatcatcaaccatcggccgccagctccgatgctgaacccgtgg
gaaaaggcgccattctcgaggatagaccagaacatgattcctccgccaccgatccggccg
cactatccgccgcccattggcatgaacaacatcgtgggtggtccgatgcagacaatgctg
atgccgggcgtggccaagctgaacgacagcgttcgtacgatcaacatcgacggtatccag
agggaaatccggttctacgacgacattgcggtcattttcatgagctgggatgaaccgaaa
gagatcggtttccagaagggctctcggatggtcgttgtcgatgatcgcgactcgttcgag
ctgagcttcaacgaatgctacaagtccatcacgatcgagggtaaagtttaccagatgaag
ctgggtgcgccaacgcgtgagctatacatcgacaacagctggtacgagtgctactttggg
gatcccccgtcgaacatcaccctggacggcattacgcgcgtcttcaagatcagcggacct
gccccgcaggtcaagattggaaacagtcgcaacgatctcgtggctggcaaaatcaacatg
atcgtcaatgcggaaacgatcattcccgtgttcctggactcgcaggtgcaaatgtttgaa
atacagggcacgatccacaagctgcagtttgcagactttctgttgacggtcatcttggac
gatcatccgtatcctgttgagttcggtgggctgccaaaagtgttcaaactacgcggcaag
gatttctacatccgattcaccgcaatcccgaagctggttgtggccggccgggtgtacatc
agggacatgatccgaacgccactacatcgtgacctgcggacgccaccccgcgaccaaagt
atgctgccaccgtttatgcctcaactcagcaacgtgatgccgtccatgtcgggtccacca
aatcatttgttccctgccatccaacaacaagcgccactgatagttccaccgatggtcacc
gggctggactatttgacgaaccttatgccgcactcgatccccgcagccaacgtgtccaac
aacttgaccggctaccagattcaatccgaggacaaaccagcggcagctcccatcatgccg
acaccggccatagctgcgcctccagcaacaaactccgccgcaatcccaatcctgcaaaac
atcaacatcgacgagctgtacaagaaaatcgtggctgccggaattctctccaagagcaac
agcgctccggccagcacctcgacgtccgccacttcggtcgccagcaagctggacaaagcc
ctcgaagaagagctggaggaaatcgaaccggtgttcctgaacaaagccgaccagctcaag
aagcgccaatcggccatcgtttcacagctgttttgtggaatgcagtgcagcagttgcggc
gttcggttcccgccggaacaaaccatgaagtacagccagcatctggattggcacttccgg
cagaaccgtcgcgatcgtgactccgcccggaaggcacactcgcgcaagtggtactacgac
gtgtccgattggatccagtacgaggagatcgaagacctggaggagcgcgagaagaactgg
ttcgagacgcaacaaaccgagcagaccgagttcaatggcgatggcgatacgggtgggcgc
aacgtggagtctcccgtgccgagctgtccggctggttcggacgaggcggacaagcggtgc
cacatgtgccacgacgagtttgagcagttttactgcgaagacaccgaagaatggcacctg
cggaacgccacccgggtggaggagaacacgtaccatccgttgtgctacgaggactacaag
gcatcgctgacgctcgacgagaccgccatgaacgctactaccgacgatgcggacaagagc
aagatcgatgacgacgtcgaggaggtgaagatcaagcaagaggtgatcagcgatgctgac
gacaccgccagggaaatcatcatggatgatgacgacgatgtcattgtgttgcctccgtcg
aaggaagtcgtgaccgaaattcccgacgacgacgacattgaaacgctggactcgcactct
acaggcgaggacggccgaacgcaatcagcggcgggcggtgaagacggtggtgccagcaaa
tcggcggaaccgcagataatcgagacgcgcattgatgacgaccttgccatacaggagccc
acgatagagaacattaccgtgaacgatctggacgaaagcgaagagttccgcagcggtggt
ccagacgacgagggctcccaaactagtcaaccgataaaggtgaaggaggaaccgaaggat
gaggacgagatcgacgaagaggatgcccagttcgaggacgtgggtacgctcgagcagtcg
gttatggtggaagatgtttccaaagacacagacaccgttgacgtggaagcggttccgtcg
ccaacgcccgcactggaaagcaccagccagagtcagctcaagccatcgctcgacggaaac
atcgagctgcaggacgcacccgcgaccagcatcattacgaaccgcatcaaaatcaatatc
acaaaggcaaaaactacaaacacctcagcctcagcagccagcagcaatagcgtaagttct
cacggaggtggttctagcattgcggttctggtcagcggtggaggcggcagcggcggcggc
aacaacaattacatcgacagtcactgcgatgacctgctgtactcgaacctggacgacgtg
cacggcggcggggacaacagccagaacagcagcaaccagttgataatgatgatgcatgaa
gaagaactagaagaatctaataaaggcccggtcacggcgaccgaagaagaaccgactgat
cttgcgtatgatttgaagccgagtctgcacggtattgaattcatccggcagcctcgcgtc
gagaacggattggaacaatccgggctctgctctataataactgcggaatacggaataaat
tccgaatccgtcggaagtgtctcggggaccacatcgtcgaaaagttgtcggtactgtttg
gggttcagctgggccccgagctggctccggtgcgtcccgaagaggtcggccaatttgcga
cgtttcatgtgtacagtgagcagttatccggaagtgttgttggaggcgattcgcagcttg
gcgatgtccgaggtggggtggcaggaggtacgacacgtgggtaaatcccggaaccagtgt
caaaaatggcgcgaccaacgaaactctggccccaaaaagaaagtgcatgcaagacggacg
gacaaagttgatgacgaaacagcggtgcgcggacttcgccgccaaagaaagaaggagaag
aaaagaaagcatgtgacggaatttccctgccggcgtcgtccgtttgctggatcgcgcggc
ggtcgccgtatcgccatgatcataattcataacttggaacgacgacgccgatcgctggtc
accacctcattggactgttggttttga
DBGET
integrated database retrieval system
