Capsella rubella (pink shepherd's-purse): 17874926
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Entry
17874926 CDS
T02984
Name
(RefSeq) DNA ligase 4 isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
17874926
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
crb03400
]
17874926
Enzymes [BR:
crb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
17874926
DNA repair and recombination proteins [BR:
crb03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
17874926
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
BRCT
DNA_ligase_A_C
PTCB-BRCT
RNA_ligase
DNA_ligase_IV
Motif
Other DBs
NCBI-GeneID:
17874926
NCBI-ProteinID:
XP_023637186
LinkDB
All DBs
Position
Unknown
AA seq
1218 aa
AA seq
DB search
MTEEIKFSVLVSLFNWIQKSKTSSQKRSKFRKFLDTYCKPSDYFVAVRLIIPSLDRERGS
YGLKESVLATCLIDALGISRDAPDAVRLLNWRKGGTAKAGANAGNFSLIAAEVLQRRQGM
ASGGLTIKELNDLLDRLASSENRAEKTLVLSTLIQKTNAQEMKWVIRIILKDLKLGMSEK
SIFQEFHPDAEDLFNVTCDLKLVCEKLRDRHQRHKRQDIEVGKAVRPQLAMRISDVNAAW
KKLHGKDVVAECKFDGDRIQIHKNGTEIHYFSRNFLDHSEYAHAMSNLIVQNILADKCIL
DGEMLVWDTSLNRFAEFGSNQEIAKAAREGLDSHRQLCYVAFDVLYVGDTSVIHQSLKER
HELLRKVVKPLKGRLEVLLPEGGLNVHRPSGEPSWSIVVHAAADVERFFKETVENRDEGV
VLKDLGWKWEPGDRSGKWLKLKPEYIRAGADLDVLIIGGYYGSGRRGGEVAQFLVALADR
AEANVYPRRFMSFCRVGTGLSDHELETVVSKLKPYFRKNEHPKKAPPSFYQVTNHSKERP
DVWIESPEKSIILSITSDIRTIRSEVFVAPYSLRFPRIDKVRYDKPWHECLDVQAFVELV
NSSNGTTQKQKETESTQDNPKVNKSSKRGEKKNVSLVPSQFIQTDVSDIKGKTSVFSNMI
FYFVNVPRSYSLDTFHKMVVENGGKFSMNLNNSVTHCIAAESSGIKFQAAKRQRDVIHFS
WILDCCSRNKMLPLQPKYFLHLTDASRTKLQDDIDEFSDSYYWDLDLEGLKQVLSKAKQS
EDSKSIDYYKKKLCPEKRWSCLYGCCVYFYPYSQTLNTEEEALLGIIAKRLALEVLMGGG
KVSNNLAHASHLVVLAITKDSLDFTSVSKCFSEVEKPLLLKRKLWVVNSHWLEESLLREQ
KLCEDVYTLRPKYMEESDTEESDKSEHDTTEVASCDRAQTEEPASSKMEMKSSRGRSSTR
AVKRGRSSTNSQQRVQRRRGKQPSKIGGDESDESDASEEKVSSRLNDIAEETDSFGGAQT
HRNSSRGKSAKQGTSRVGKSQRVQRSRRGKKASKIGGDESEENEGMDDKDYASVDAEEID
ADGTTEENKGTPELNIAEHTESLHRENRVAVEEASRNEKTDMDMKEKLQIHEDPLQAMLM
NMIPSLSQKNTETSNRITGENRTADVYGDCESSEKRKLGAETDNTPVTADAEADTVPPPV
KKKKVSYRDVAGALLKDW
NT seq
3657 nt
NT seq
+upstream
nt +downstream
nt
atgacggaggagatcaaattcagcgttctagtatctctcttcaactggattcaaaagagc
aaaacttcgtctcagaaacgctccaaattccgcaagtttctcgacacttactgcaaaccc
tcagactacttcgtcgctgtacgactcatcattccgtcgcttgaccgggaacgaggtagc
tacggtctcaaggagtctgtgctcgccacgtgtctgatcgacgcccttggcatctctcgt
gacgctcctgacgctgttcgtcttctcaattggcgtaagggaggaaccgctaaagctggt
gccaatgctggaaacttttcccttattgctgctgaggtactgcaacgtagacaaggaatg
gcttcgggtggtttgactattaaggaattaaatgatttgcttgatcgtttagcttcaagt
gagaacagagcggagaaaactttggttctttctactctgattcagaagacaaatgctcag
gagatgaagtgggtcattaggataattttaaaagatttgaaactggggatgagcgagaag
agcatctttcaggagttccatccagatgctgaggacttgtttaatgtcacatgtgacttg
aagctagtttgtgaaaagttgagggatcgacaccaacggcacaagcgccaggatatagag
gtaggaaaagccgtacgaccacaattagctatgcgtatcagtgatgtaaatgctgcttgg
aagaagctacatgggaaagatgtagttgctgaatgcaaatttgatggggatcgcatacaa
atacacaaaaatgggactgagatacattatttctctaggaactttctcgaccattctgaa
tacgcacatgccatgtcgaatcttattgtacaaaatatattggcggacaagtgcatcctt
gatggcgaaatgttggtctgggatacatctctcaatcggtttgctgagtttggttcaaat
caggaaatagccaaggcagcaagagagggtcttgacagccatagacagttgtgttatgtt
gcttttgatgttctttatgttggcgatactagcgtcatccaccagagtttgaaggaacgg
catgaattgctgaggaaagtagtcaagcctttaaaaggtcggctcgaagttttattacct
gagggtggtctcaatgtccaccgcccttcaggggaacctagttggtctattgttgttcat
gctgctgctgatgttgagcgatttttcaaagaaacagttgaaaacagagatgaaggagtt
gtgcttaaagatctgggatggaaatgggaacctggagatcgtagtggcaaatggttaaag
ttgaagcctgaatatatccgggctggtgctgaccttgatgttcttataataggaggatac
tatggctccggacgtcgtggaggggaggtagcacagtttcttgtcgcattggctgaccgg
gcagaggcaaatgtgtatcccaggcgatttatgtccttttgtagagttggcactggactt
tctgatcatgaacttgaaactgttgtaagcaaactgaagccttatttcagaaaaaatgaa
cacccaaagaaggctccaccaagtttctatcaggtcacaaatcactcaaaagagagacca
gatgtttggattgaaagcccggagaaatcaattatactctcaatcactagtgatatcagg
acaataaggtctgaggtgtttgttgcaccttacagtctgagatttcctcgtattgataaa
gtaagatatgacaagccttggcatgaatgtcttgatgtgcaggcttttgtggaattggtg
aactcgagtaatggcaccacacagaaacagaaggaaactgaaagcacccaggacaatccg
aaagtcaataaatcctccaagagaggagagaaaaagaatgtctctcttgtcccttctcag
tttattcaaactgatgtatcggatatcaagggcaagacctcagtcttctcaaatatgata
ttttattttgttaatgtgcctcggtcctattctcttgatacatttcacaaaatggtggtt
gagaatggaggaaagttctcaatgaacttaaataactcagtgactcattgcattgcagcg
gaaagcagtggaataaagtttcaggcagcaaagcgtcaacgagatgtcatccacttttca
tggatcttagattgttgttcacgaaataagatgcttcctttgcagccaaagtacttcctc
cacctcactgatgcttcaaggacaaaattacaggatgacattgatgaattttcggattct
tattactgggatttagaccttgaaggtctcaaacaggttttaagcaaagccaagcaatca
gaagactcaaaatccattgattactacaagaaaaagttatgtccagagaaaagatggtcc
tgcctgtatggctgctgtgtttacttttacccatatagtcaaacattgaacactgaagag
gaagctctgttgggaattatagctaagagattagctcttgaagtcttaatgggtggtggt
aaagttagcaataatcttgctcatgcgtcgcacctcgtagtccttgctataacaaaagac
tctttggattttacttcagtttcgaaatgtttcagcgaagtggagaagccccttctgttg
aagagaaagctgtgggttgttaactctcattggctagaagagagcttgctaagagagcaa
aaactttgcgaggatgtctacactctgcggcctaagtatatggaagagtctgatactgaa
gaatcagataaatctgaacatgatacaacggaagtagcttcctgtgatagagctcaaacc
gaagagccagcttcctctaaaatggaaatgaagagttcaagaggacggtcaagtactcgg
gctgttaaaaggggaaggtcttctacaaactcacagcagcgagtacagagacgcagaggc
aagcagccttctaagataggcggagacgaatcagatgagagtgatgcttctgaagaaaag
gtttcatccagactcaatgatatagcagaagagaccgattcgtttggtggggctcaaact
catagaaactctagcagaggaaaatccgcaaagcaaggaacgtctcgtgtgggaaaaagc
caaagagtacagagatcacgaagaggcaagaaggcttcaaagataggaggagatgagtct
gaggaaaatgaaggtatggatgacaaagactatgcgtcagttgatgcggaagagattgat
gcagatggtactacagaggaaaacaaaggaaccccagagcttaacatagcagagcacaca
gaatcattgcatcgagagaacagagtagcagttgaagaggcctctagaaatgaaaagact
gatatggacatgaaggagaagttacaaatccatgaggatccgttacaagctatgttaatg
aacatgatcccgagcctcagtcaaaaaaacacagagacatcaaaccgaatcactggggaa
aatagaaccgctgatgtgtatggtgattgtgagtcttcagagaaaaggaaactcggcgcc
gagactgataatactcctgtgactgcagacgcagaggcggatacagttcctcctcctgtg
aagaaaaagaaagtcagctaccgagatgttgctggagcactcctcaaagactggtaa
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integrated database retrieval system
