Capsella rubella (pink shepherd's-purse): 17895041
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Entry
17895041 CDS
T02984
Name
(RefSeq) protein PAT1 homolog 1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
17895041
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crb03019
]
17895041
Messenger RNA biogenesis [BR:
crb03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
17895041
mRNA degradation factors
5'-3' decay
Decapping complex
17895041
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
17895041
NCBI-ProteinID:
XP_023643575
LinkDB
All DBs
Position
Unknown
AA seq
799 aa
AA seq
DB search
MDAFGIGSSMNQPPVTEDLKKFGDNPAGNTMFDASQYAFFGNDVVEEVELGGLEEEDEIL
SFTGIAEDFSFDKEEVDNSRSLSDVDDLASTFSKLNREPDVYRNMGQINDKRSMQNSLAA
EWTHGEELPNWYGRKILDSDAIKDDKVWSAQPFSSLDLVDQRNHDRSTLYPEPQRQLHQD
HNQQQFSSEPIHVPKSSFVSYPPPGSISPDQRLGHPNIPYHSGGPQMGSPNFSPFPALQP
QLPGMHHGSTQHAGNMSQFRPALPLNNHPPAQWMNRQNMHPGDSSGIMNNTMLQQPPHPN
GLMPSQMQGSQNRLPHPMQPPLGHMTGGQPQLINSHLSRSSSSGNYDGMLGLGDPREARP
GSGHGNRQNMRFHQQGFDGGVQRRYSGWPPFRSKYMSADEIENILRMQLVATHSNDPYVD
DYYHQACLAKKSAGAQLKHHFCPNHLRDLQQRARTNNEPHAFLQVDALGRVPFSSIRRPR
PLLEMDPPNSTKFGNAEHKATNKPLDQEPMLAARVYIEDGLCLLLEVDDIDRYLEFNQLP
DRGHQLKQRRQSLLDSLADSLQLADPLAKNGQSRSHDDFLFLRIISLPKGRKLLTRYLEL
IFPGSDLMRIVCMAIFRHLRSLFGVLSSDLDIVKTTNKLAKVINLCIHDMELGSVSVCLA
AVSCSSEQPPLRPLGSPVGDGASTILKSALDRASELIRANNFNNAGMALWRASFNEFFNL
LMKYCVSKYDSIMQSLNSQLPPHFATEISEAAAQAIVREMPIELLRSSFPHIDEQQKRIL
MEFLKRSMLGSQKTEPVLG
NT seq
2400 nt
NT seq
+upstream
nt +downstream
nt
atggacgctttcggaattgggagcagtatgaatcagcctcccgtaaccgaggatcttaag
aaatttggagataatcccgcaggtaatacaatgtttgatgcatctcagtatgcctttttt
gggaacgatgttgtcgaggaggttgagctgggtggattggaagaggaagatgagatattg
tctttcactggaatagcagaagacttttcatttgataaggaagaggttgataattctaga
tctctgtctgacgttgatgatcttgctagtactttttcaaagttgaatagggagcctgat
gtatatagaaatatggggcaaatcaatgataagcgatctatgcagaattctttagctgct
gagtggacccatggggaggagttgccaaattggtacggccggaaaatactggactctgat
gccattaaagatgacaaggtgtggtcagcacagcctttttcatctctggaccttgttgac
cagagaaaccatgacagatcaacattgtacccggaaccacaacgtcaactgcaccaagac
cataatcaacaacagttttctagtgaaccaattcatgtcccaaagtcatcttttgtttca
taccctcctccaggcagcatatcaccagatcagcggttaggacaccctaatataccatat
cattctggtgggcctcaaatgggatccccaaacttctctccttttccagctttgcagccg
cagttgcctggcatgcatcatggatcaacgcagcatgctggaaacatgtctcagtttcga
cctgctcttcctctgaataatcaccctccagctcaatggatgaatcgtcagaatatgcat
cctggggatagttctggtatcatgaataatacgatgctacaacagccgcctcatccaaac
ggtttgatgccttcacagatgcagggctctcagaataggttaccacatccaatgcagcct
cctcttgggcatatgacaggagggcagcctcagttaattaattcccatctctctcgatca
tcatcctctggaaattacgatggaatgcttgggcttggtgatccgagggaagcaagacca
ggatcaggtcatgggaacagacagaacatgcgttttcaccaacaaggctttgatggtggc
gttcagaggagatatagtgggtggcctccgttccggtctaaatatatgtcagctgatgag
atagagaatatactgagaatgcagcttgttgctacacacagcaatgatccttacgttgat
gattactatcaccaagcctgtcttgctaagaaatctgctggtgcacaactgaaacatcat
ttttgtccaaatcatttgagggaccttcagcagcgtgcacggacaaacaatgagccccat
gcttttcttcaggttgatgctcttggtagggttcctttctcttcgatccgcaggcctcgt
ccacttcttgaaatggaccctccaaattcaactaaatttggtaatgcggagcacaaagct
accaataagccccttgatcaagaaccaatgcttgcagctagagtgtacattgaggatggt
ctttgtctcctccttgaagttgatgatatagatcgttacttagagtttaaccaactcccg
gacagaggtcaccagttgaaacaaagacggcaatctttgctggatagcctcgcggattca
ctacagcttgctgatccccttgccaagaatggacagagccggtctcatgatgattttctc
tttctaaggattatctctcttccaaagggtcggaagctacttacaaggtatcttgagctt
attttccctggcagcgacctaatgcggatagtttgcatggccattttccgtcatttaagg
tcactgtttggagtcctctcatctgaccttgatatcgtcaaaaccacaaacaagcttgca
aaagttataaacttgtgcatccacgacatggagttaggatcggtaagcgtgtgtctagca
gcagtgtcttgttcttctgagcagccaccgctccgtcccttaggcagtcctgttggagat
ggggcttccacgatactgaaatcagcattagacagagcttcggagcttattagggcaaat
aatttcaacaacgcaggcatggctctatggcgtgcgtcctttaacgagttctttaatctg
ttgatgaagtactgcgtaagcaaatacgatagcatcatgcagagtttgaattcacaattg
ccaccgcattttgctactgagatatctgaggcagctgctcaagccattgtccgcgaaatg
ccaattgagcttctacgttcaagtttcccacacattgatgagcagcagaagagaatactc
atggagtttctgaaacggtctatgctcggaagccagaaaacggagccagtcttaggctga
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integrated database retrieval system
