Capsella rubella (pink shepherd's-purse): 17895331
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Entry
17895331 CDS
T02984
Name
(RefSeq) tetratricopeptide repeat protein SKI3
KO
K12600
superkiller protein 3
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
17895331
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crb03019
]
17895331
Messenger RNA biogenesis [BR:
crb03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
17895331
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_17
TPR_8
TPR_11
TPR_14
TPR_16
TPR_19
TPR_7
TPR_12
TPR_9
TPR_6
TPR_20
BTAD
Y2_Tnp
Motif
Other DBs
NCBI-GeneID:
17895331
NCBI-ProteinID:
XP_023643391
LinkDB
All DBs
Position
Unknown
AA seq
1168 aa
AA seq
DB search
MELEQLKMSVEANPDDSSLQFQLGLYLWDNGGESEKAAEHFVLSAKLNPNNAAAFKYLGH
YYSRVTLDLNRAAKCYQRAVLINPNDSDSGEALCDLFDRQGKEILEIAVCRDASEKSPKA
FWAFCRLGYIQLHQKKWSEAVQSLQHAIRGYPTMSDLWEALGLAYQRLGMFTAAIKAYGR
AIELDETKIFTLVESANIFLMLGSYRKGVELFEQALKISPQNISVLYGLASGLLSWSKEC
INLGAFGWAASLLEDARKASKESSELSSNMSCIWKLYGDIQLTYARCFPWSGGTQNSEFT
LKTFSDSILSWKSICYSAALSAKASYQRALHLAPWQANIYTDIAITCDLVSSLSDDSETS
SSWKLPEKMALGALLLECENSEFWVALGCMSNNCALKLHALIRALHLDVSLAVAWAFMGQ
IFRESNEMKFAKQAFDCARSIDPTLALPWAGSADTYARESTSDEAFESCLRAAQISPLAE
FQVGLAWLALLQENISSPQIFACIEQAVQRTPYYPESHNLHGLVCEARHNYHTAIASYRL
ALAAMRIYPDNSVKFYAGKVSMNLVRSLSKAGRFKESVMECENLKSKGLLDAGSLQIYAF
SLWKIGENDSALSVIRDLASRISTMEKPLIASPISFICSLLYCISGVDSAITSIQKMPKD
FFQSSKISFIVSAIHSLDQSDRLLSIVASTRSYITSQEEIVAMHYLIALSKLLKTGAGDF
LGFEKGIAHLRKAIHMYPHSNLIRNLLGYILLADEGMKDVCTASRCCIINVSDCVNTEGL
KSALEVLGGGSVACNVIGNTAPRFSFPTCHCQRLNAPVVVGELQRFLHQEPWNSGVRYLL
ILNLVQKAREQRFPGQLCSAIERLISVALSDETCSKEGEYQKFQLLLCASEISLQKGNIA
ESIANARKASSLSLPSSYLFLGHLQLCRAYAAKGSTRNIQEEYRACLELKTDSNIGWICL
KLIESQYVLEPDANFLEMSLQECSSQKKNSWKEWMGVYSFARGLDSIRKKDFLSAEEFLA
QACSLLNSESCLLLCHGAVCMELARQSNDSQFLSLAVKSLSKVQASLLIPLPIVYTLLAQ
AHGSLGSKEKWEKNLRLEWFCWPPEMRPAELYFQMHILARQSEDRPETASGIEVYQSPEK
WVTRAIHTDPSCLRYWKVLDKLVQHPTS
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
atggaattggagcaacttaagatgtctgtggaagcgaacccagatgattcttctctacaa
ttccaactcgggttatatctgtgggataatggtggagaatccgagaaagcggcggagcac
tttgtgttgtcggcgaaactgaacccgaataatgcagcggcgttcaagtatttagggcat
tactactcgcgtgtgacgcttgatctcaatcgagctgctaagtgttaccagagagcagtg
ttgataaaccctaatgactctgattccggagaagctttgtgcgatttgtttgacagacaa
ggcaaggaaatcttggagattgctgtttgccgtgacgcttctgagaagtctcctaaggct
ttctgggcattttgtagattgggttacattcagcttcatcagaagaagtggtctgaagct
gttcagagccttcaacatgcaattagaggttatcctaccatgtctgacttgtgggaagct
ctaggcctggcttaccagcgacttggaatgtttactgctgctatcaaggcgtatggccgc
gccattgaattagatgagaccaaaattttcacattagtagagagtgcaaatatctttttg
atgcttggttcatatagaaagggtgtggagctatttgagcaagcgttgaagatttcgcct
cagaatatttctgtgctttatggtcttgcttctggattgcttagttggtcaaaggaatgc
ataaatttgggcgcatttgggtgggcagcttcattgttggaggatgcccgtaaagcttcc
aaagaaagcagtgaactgtccagcaacatgtcttgtatatggaaattgtatggggatatt
cagcttacatatgcaagatgttttccatggtctggtggaactcaaaactcagaattcacg
ttgaagacatttagtgattcaatcctttcttggaaaagcatttgttactcagctgcattg
tcagccaaagcttcttaccagcgagctctacacttagccccttggcaagctaacatttat
actgacatagccataacctgtgatcttgtttcaagtttgagtgatgactctgaaacttca
agttcttggaagttaccagaaaagatggctctgggagcattattgctggaatgcgaaaac
tcagagttctgggttgctttgggttgtatgtctaataattgtgcgttgaaactacatgct
ttaatccgggcattgcatttggatgtatctttagccgttgcttgggcttttatgggccag
atcttcagggaatcgaatgaaatgaaattcgcaaagcaggcttttgattgtgctagaagc
attgatcctacacttgcgctaccttgggctggctcagctgatacttatgcgagggagtca
acatcagatgaggcttttgaaagttgtttacgagctgctcagatatcacctcttgcagag
ttccaagttggtctggcatggcttgctttgctgcaggaaaatatatcatctccgcagata
tttgcttgcattgagcaggcagtgcagcgcaccccttattaccctgagtcccataatcta
catgggttagtttgtgaggcaaggcataattatcacactgccattgcttcatataggcta
gcactagctgcaatgcgcatttaccccgacaattcagtgaaattttatgctggaaaagta
tctatgaatttggtcaggtcactcagcaaggcaggacgattcaaagaatctgttatggaa
tgcgaaaatctgaagtcaaaaggtttgcttgatgccggaagtttgcaaatatatgctttc
tctctgtggaagattggtgagaatgattcagctctctcagtaattcgagatctggctagt
aggatttctaccatggaaaagcctttaatagcctccccaatcagtttcatttgtagtctg
ctttattgcatatctggggtagattctgctataaccagcatccagaaaatgccaaaggat
ttcttccagagttcaaaaatcagctttatagtatctgccatccattctcttgatcagagt
gatagacttctgtcgattgttgcaagcactcgtagctatattacatcacaagaagaaata
gttgcaatgcactacttgatagcactcagcaaattgctaaaaacaggagcaggagatttc
cttggatttgagaaggggattgcccacctcagaaaagctattcacatgtatcctcatagt
aatttgataaggaacctgcttggatatattttgttagccgatgaaggaatgaaagatgtc
tgtactgcgagtagatgttgtatcataaatgtctctgactgtgtaaatacggaaggtctg
aagtccgcattggaggtccttggaggaggatcggttgcttgcaatgtaattggcaataca
gctccaaggttctcatttccgacatgccattgtcagcgtctgaatgctcctgttgttgtt
ggggaactgcaaagattcttgcatcaagaaccttggaacagcggtgtaagatacttgctt
attctgaatctcgtgcagaaggcacgtgagcagagatttcctggccaactttgtagtgct
attgagcgtctaatctctgtggcactctctgatgagacttgttctaaggaaggcgaatat
caaaagttccagcttctgctttgtgcttctgagatcagtttgcagaagggaaatatagca
gagtccattgccaatgctcgaaaggcatcttccctttcgcttccaagtagctacctattt
ctaggacatttgcaactttgccgtgcttatgcagcaaaagggagtacgagaaacattcaa
gaggaatacagagcgtgtttggagctaaagactgactcaaatattggttggatttgcctg
aaactcatagaatctcagtatgttctggaacctgatgcaaacttcttagaaatgagccta
caagaatgctcgagccagaagaagaattcatggaaagaatggatgggtgtatacagcttc
gctcgtggattagattctatcaggaaaaaagactttttgtcagcagaggaattccttgca
caagcttgttcgttgttaaattcagagagctgtctacttctctgccatggtgctgtctgc
atggaactggctagacagtctaatgactcacaattcctctcactggctgtaaaaagtctt
agcaaagttcaagcaagtttgttgattcctttgcctatcgtgtatacattattagctcaa
gcacatgggagtcttggctctaaagagaaatgggagaagaatcttcgtcttgaatggttc
tgctggccaccagaaatgagacctgcagagctttacttccagatgcatatacttgcaaga
caatcagaagacagacctgaaaccgcttcagggattgaagtctaccaaagccctgagaaa
tgggtgactagggcgattcacacagacccttcttgtctgagatattggaaggtcttggat
aagcttgttcaacatcccacgagctga
DBGET
integrated database retrieval system
