KEGG   Capsella rubella (pink shepherd's-purse): 17897174
Entry
17897174          CDS       T02984                                 
Name
(RefSeq) general transcription factor IIH subunit 2
  KO
K03142  transcription initiation factor TFIIH subunit 2
Organism
crb  Capsella rubella (pink shepherd's-purse)
Pathway
crb03022  Basal transcription factors
crb03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:crb00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    17897174
  09124 Replication and repair
   03420 Nucleotide excision repair
    17897174
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:crb03021]
    17897174
   03400 DNA repair and recombination proteins [BR:crb03400]
    17897174
Transcription machinery [BR:crb03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     17897174
DNA repair and recombination proteins [BR:crb03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     17897174
SSDB
Motif
Pfam: Ssl1 C1_4 VWA_2 Tfb4 IBR
Other DBs
NCBI-GeneID: 17897174
NCBI-ProteinID: XP_006307618
UniProt: R0GXI8
LinkDB
Position
Unknown
AA seq 421 aa
MSNQRKRLSGEREDEDDEDAEGIGEWERAYVDDRSWEELQEDESGLLRPIDNSAIYHAQY
RRRLRMLSAAAAGTRIQKGLIRYLYIVIDFSRAAAETDFRPSRIAVMAKHVEAFIREFFD
QNPLSQVGLVSIKNGVAHTLTDLGGSPETHIKELMGKLEALGDSSLQNALELVNEHLSQV
PSYGHREVLILYSALCTCDPGDIMDTIQKCKKSKLRCSVIGLSAEMFICKHLCQETGGLY
SVAVDEVHLKDLLLEHAPPPPAIAEFAISNLIKMGFPQRAAEGSMAICSCHKEVKIGAGY
MCPRCKARVCDLPTECTICGLTLVSSPHLARSYHHLFPIAPFDEVPALSSLNDSRKDLGK
SCFGCQQSLNGAGNKPGPCVTCRKCKHYFCLDCDIYIHESLHNCPGCESIHRPKSVSLME
E
NT seq 1266 nt   +upstreamnt  +downstreamnt
atgagtaatcaaagaaagaggttaagcggagaaagagaagacgaagacgacgaggatgcg
gaaggtatcggcgagtgggagagagcgtatgttgacgacagatcctgggaggagttgcaa
gaagatgagtctgggcttttacgcccaattgataacagtgccatctaccatgctcagtat
cgtcgccgtctccgcatgctctccgccgctgctgctggtactcgtatccaaaagggactt
attcgctatctctacatcgtcattgatttctctcgggcagctgctgaaacggatttcaga
ccaagccggattgccgtaatggcaaaacatgttgaggcttttattagagagttctttgat
cagaatcctctgagtcaagttggtttagtgagtattaaaaatggagttgcgcatactctt
acagatcttggtggtagtcctgagactcacattaaagagctgatggggaagttggaagcc
ttgggtgactcctctttgcagaacgccctggaacttgtaaatgagcacctcagccaggtt
ccatcttatggtcatcgcgaggttctcatattgtactctgctttatgcacttgtgatcca
ggcgatatcatggataccattcaaaaatgcaagaaatccaaattaagatgttctgtaatt
gggctttctgcagaaatgttcatatgtaaacatctctgccaggaaactggtggattgtat
tctgttgcagtagatgaggtgcacctaaaggatcttctactcgaacatgcgcctccacct
ccggcgatagcagaatttgcaatttcaaatctgatcaagatgggtttcccacaaagagct
gctgagggttcaatggcaatatgttcttgtcataaggaagtaaagattggagctggttac
atgtgcccgagatgcaaagctagggtatgtgacctcccgacagaatgcactatctgcggt
ctaacacttgtctcatcaccacatttagcgagatcataccatcaccttttcccaatcgcc
ccatttgatgaggttcctgctctttcaagtctgaatgattctcggaaagatttgggaaag
agttgttttggctgccaacagagcctaaatggcgcagggaataagcctggcccatgcgta
acatgtcgtaaatgtaagcactatttctgtctggactgtgacatatacatacacgagagc
ttacacaattgtcctggctgtgagagtattcaccgtcccaagtcagtttccttgatggaa
gaatga

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