Chlamydomonas reinhardtii: CHLRE_16g676400v5
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Entry
CHLRE_16g676400v5 CDS
T01039
Name
(RefSeq) uncharacterized protein
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
cre
Chlamydomonas reinhardtii
Pathway
cre03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cre00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CHLRE_16g676400v5
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cre03041
]
CHLRE_16g676400v5
Enzymes [BR:
cre01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CHLRE_16g676400v5
Spliceosome [BR:
cre03041
]
Complex A
U2 snRNP components
U2 related factors
CHLRE_16g676400v5
Complex B
CHLRE_16g676400v5
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
5721481
NCBI-ProteinID:
XP_042916088
LinkDB
All DBs
Position
16:complement(6012710..6023655)
Genome browser
AA seq
1425 aa
AA seq
DB search
MGRDKSRSPSRKHKDKEKKEKKEKKERKDHDRDYDRGHRERSADRYERRDRPRDDYGGPP
RDRDRYRDHGPPPPGDYRGGGIDLRGPPADRDYDRDRERGDRDRERDRSDRDRDRHRESE
RNDRGAGERRGRGDDGDDGGEPSSKRRREGSAAPGGAGAASAPGGLTGAAAAALGMTAEA
VAVAARPGLTAEEAAQQRRDAEAAVLEQQAERRRKAVEEWRKKRLADQGIVEPEAQPEVK
EEPVAGEAPGAAATTSNGGEGAAAAASNGDATGGGGPEAQPGEEGGEAGAGASKQKQKGW
SLEDDDEDSDDGGGGGDPDEEMPDADGDGDGDALRPPPMLGMKKEQEDDDDDDPLDAFMG
GLGAGGAGKGPRPVAGPRPTPGKPLLGGKFGAPVGLGAKKGFVFATPGAAAASGSAAAGA
GAAAPAAAAAKPEPQPAAEAAGAGEGGAAAAAPAAAAAAKPRRKWAPVEPVAKAENGGGG
DDDEVDPLDAFMAAEVLPEVHKLAVQAAQAVEDAAVAAAAAAREPSPAPGSDDMDVDGDA
AAQVKPDPDLPGPSSRLSPPPVAGPSARVNGNVGPGAGPLGAAGRGGSAARRKPRAAFKR
RAGSSDESSSDGSDEDKDSDDMDDAEWARLVTAGKLSKGDKLVAVDHSTIDYPPFRKNFY
IEVTELTRLSPEELAELRAELDGIKVRGKNIPAPVRSWTQAGLSSRILEVLKKRGFDRPL
PIQAQALPIIMSGRDCIGIAKTGSGKTGAFVLPMMRHIKDQRPLEQGDGPVALVIAPTRE
LVAQIAKEAKAFAKPLGLNALAVFGGSGVANQITELKRGVEIVACTPGRMIDLLVTSNGK
ITNLRRVTYLVMDEADRMFDMGFEPQISRIIQNIRPDRQTVMFSATFPRAVEALARKVLQ
DPVEIQVGGRSVVNDSITQWVELRPEKERFHRLLEILGEWYERGKLLIFVDKQESCDNLF
RDLLRYGYPCLSLHGGKDQSDRESTIADFKGAVCNILVATSIAARGLDVKDLVLVVNYDV
PNHHEDYVHRVGRTGRAGAKGTAITFISEEEERYAPDLVKALRESGAPVPQDLQALADSF
NTKHKAGLVKAHGSGYGGSGFKFDTNEEERHRTDKKAKAKAMGLEVEGEDEAEEAALDAA
VASLDADDIRPKSAANANTGSAAAPLNPADSVSAVVAAAREKLAEAAKAGLIQVPAAAAA
GAMGPPGAAGAGAAAPGAAAAAVAAAAAAAAAANPLLAAAQQVAAKLTMQVTAGLPPSAT
GPSPQPMSTATPAAPGMPSISADALARAAAIAAKFGGTIALPGMSAGGGGAGGAAGRTAP
GAPAGGFEAELEINDFPQHARWKITHRETMNQINELTGAALTVRGTYVQPGRPVPEGERK
LFLLIEGPTEQHVKKAKAEIKKILEETTEKIMRRDAPAAGRYSVM
NT seq
4278 nt
NT seq
+upstream
nt +downstream
nt
atggggcgcgataaatcgcgttcaccctcgcgaaagcacaaggacaaggagaagaaggaa
aagaaggagaagaaggaacggaaagaccacgaccgtgactacgatcggggccaccgggag
cgctcggcggaccgctatgaacgtcgtgacaggcctcgtgacgactacggagggccgccc
cgcgacagggaccgctaccgcgaccacggcccgcctccgcctggcgactaccgcggaggc
gggattgacttgcgggggccgcccgccgaccgggactatgaccgggaccgggagaggggc
gaccgggatcgcgaacgtgaccgcagtgacagggatcgggaccgccaccgggagtcggag
cggaacgaccgcggcgccggcgagcggcgcggccgcggcgacgacggtgatgatggcgga
gagccgtcgtcgaagcggcggcgggagggcagcgcggcgccgggaggcgccggcgctgcg
tcggcgccaggcgggctgacgggggcggcggcggcggcgctgggcatgacggctgaggcg
gtggcggtggcggcgcggccggggctcacagccgaggaggcggcgcagcagcggcgtgac
gctgaggcggcggtgctggagcagcaggcggagcggcggcgcaaggcggtggaggagtgg
cgcaagaagcggctggcggaccagggcatcgtggagcccgaggcccagccggaggtgaag
gaggagccggtggcgggcgaggcgcccggcgcagccgccaccaccagcaacggcggagag
ggcgcagccgcggccgccagcaacggcgacgcaaccggcgggggcgggccggaggctcag
cccggcgaggagggcggcgaggccggcgcgggggcttccaagcagaagcagaagggctgg
tcgctggaggatgatgatgaggacagcgatgacggaggcggcggcggcgacccagatgag
gagatgcctgatgcggacggcgacggggacggtgacgcattgcggccgccgcccatgcta
ggcatgaagaaggagcaggaagacgacgacgatgatgatccgctggatgcattcatgggc
ggcctgggggcgggtggggctggcaagggcccgcggcccgtggcagggccccgccccacg
cccggaaagcccctgctaggcggcaagttcggcgcgccggtggggctcggcgccaagaag
ggctttgtgtttgccacgcctggggcagcggcggcgtcgggatcggcggcggcaggagcg
ggcgcggcagcacctgcggcggcagcggcgaagcccgagccccagcccgcggctgaggcc
gcaggggctggggagggcggcgcggcggcggcagcacccgccgctgccgcggcagcaaag
ccgcggcggaagtgggcgccggtcgagccagtggccaaagccgagaacggcggcggcggc
gacgacgacgaggtggacccgctggacgccttcatggcggcggaggtgctgccggaggtg
cacaagctggcggtgcaggcggcgcaggcggtggaggacgcggcggtggcggcggcggcg
gcggcgcgggagccgtcgccggcgccgggcagcgacgacatggacgtggacggcgacgca
gcggcgcaggtcaagccggaccccgacctcccaggtcccagcagtcgcctctcgccgccg
cccgtggcgggcccctccgcccgcgtcaacggcaacgtgggcccgggcgcggggccgctg
ggcgcggccgggcgcggcggctcggcggctcgacgcaagccgcgcgctgcgttcaagcgg
cgtgcgggcagcagcgacgagtccagcagcgacggcagcgacgaggacaaggactcggac
gacatggatgacgcggagtgggctcggctggtgactgcgggcaagctgagcaagggcgac
aagctggtggcggtggaccactccaccatcgactacccgcccttccgcaagaacttctac
atcgaggtcacggagctcacgcggctgtcgcccgaggagctggccgagctgcgggcggag
ctggacggcatcaaggtgcgcggcaagaacattccggcgccggtgcgctcctggacgcag
gcggggctgtcctcgcgcatcctggaggtgctcaagaagcggggcttcgatcggccactg
cccatccaggcgcaagcgctgcccatcatcatgagcggccgcgattgcatcggcatcgcc
aagaccggcagcggcaagacgggcgccttcgtgttgcccatgatgcgtcacatcaaggac
cagcggccactggagcagggcgacgggccggtggcgctggtgattgcgcccacacgcgag
ctcgtggcgcagatcgccaaggaggccaaggccttcgccaagccgctggggctcaacgcg
ctggcagtgttcggcggctcgggcgtggccaaccagatcacggagctgaagcgcggcgtg
gagatcgtggcctgcacgcccggccgcatgatcgatctgttggtcacctccaacggcaag
atcaccaacctgcgccgcgtgacctacctggtgatggacgaggcggaccgcatgtttgac
atgggcttcgagccgcagatcagccgcatcatccagaacatccggcccgaccgccagacg
gtcatgttcagcgcgaccttcccgcgggccgtggaggcgctggccaggaaggtgctgcaa
gaccccgtggagatccaggtgggcggccgcagtgtggtgaacgacagcatcacgcagtgg
gtggagctgcggccggagaaggagcgcttccaccgcctgctggagatcctgggcgagtgg
tacgagcgaggcaagctgctcatattcgtggacaagcaggagagctgcgacaacctgttc
cgcgacctgctgcgctacggctacccctgcctgtcgctgcacggcggcaaggaccagtcc
gatcgcgagtccaccatcgccgacttcaagggagccgtgtgcaacatcctggtcgccaca
tccatcgcggctcgcgggcttgacgtcaaggatctggtgctggtggtgaactacgatgtg
cccaaccaccacgaggactatgtgcacagagtgggccgcaccgggcgcgcaggcgccaag
ggaaccgccatcaccttcatctcggaggaggaggagcgctacgcaccggacctggtcaag
gcgctgcgggagagcggcgcacccgtgccacaggacctgcaggcgttggcagactcgttc
aacaccaagcacaaggccggcctggtcaaggcccacggcagcgggtacggcggcagcggc
ttcaagtttgacaccaacgaggaggagcggcaccgcactgacaagaaggcaaaggcaaag
gccatgggcctggaggtggagggcgaggacgaggcggaggaggcggcactggacgcggca
gtggcgtcgctggacgcggacgacatccggcccaagtccgcggcgaatgccaacacgggc
tcggccgccgcaccgctcaacccggccgactcggtgtccgcagtggtggcggcggcgcgc
gagaagctggcggaagctgccaaggccggcctcatccaggtcccagccgcagcagcagcg
ggcgccatgggcccgccgggcgccgcaggcgctggcgccgccgcgcccggcgctgccgcg
gccgccgtggcggcggcggcggcggccgccgccgccgccaacccgctcctggcggcggcg
cagcaggtggctgcgaagctcaccatgcaggtcacggcgggcctgccgccgtcggcgaca
gggccatcaccacagcccatgtctaccgccacgccggcggcgccgggcatgccttccatc
tccgcggacgcgttggcgcgcgccgccgccatcgccgccaagttcggcggcaccatcgcg
ctccccggaatgagcgccggcggcggcggcgctggcggcgccgccggccgtacggctccg
ggcgcgcccgccggcggctttgaggcggagctggagatcaacgacttcccgcagcacgcg
cgctggaagatcacgcaccgcgagaccatgaatcagatcaacgagctgacgggcgcggcg
ctgacagtgcgcggcacgtacgtgcagcccgggcggccggtgccggaaggcgagcgcaag
ctgttcctgctcattgagggccccacggagcagcacgtcaagaaagccaaggcggagatc
aagaagattctggaggagacgaccgagaagatcatgcggagagacgcgcccgcggcaggg
cgctacagcgttatgtga
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integrated database retrieval system
