Magallana gigas (Pacific oyster): 105326740
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Entry
105326740 CDS
T03920
Name
(RefSeq) ATP-dependent RNA helicase DHX8
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
crg
Crassostrea gigas (Pacific oyster)
Pathway
crg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105326740
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
crg03041
]
105326740
Enzymes [BR:
crg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105326740
Spliceosome [BR:
crg03041
]
Complex C
Other components
Step II factors
105326740
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
S1
HA2_N
DEAD
AAA_22
AAA_19
nSTAND3
ABC_tran
T2SSE
AAA_16
PhoH
AAA_30
TsaE
Motif
Other DBs
NCBI-GeneID:
105326740
NCBI-ProteinID:
XP_034309636
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All DBs
Position
LG9:complement(13977005..13992271)
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AA seq
1226 aa
AA seq
DB search
MDELQKLEYLSLVSKVCTELENHLGLNDKDLAEFIIHLAEKNDTFEKFKKALDENGAEFA
DSLVANLLRLIQKMKPKPKAEVKLKKEEEIDNETLKSDIEIKKKLFPGLAIADDPKIRDM
LADEDEEKPIKTETSQPIKTERMDEDGPIKAEKGDTDIAVDMMNELEALKNAPPPQEKNR
EKDRRRDRSRSREKDRRRRRSRSRDRSRSRSRDRDQDRRRNRSRSRDRDDRRRRRSRSRS
REKDKKKWRGKDREELPMDPDIGRIYNGRVNTLMQFGCFVQLEGLRKKWEGLVHISQLRR
EGRVTNVSDVVQRGQKVKVKVLSFTGQKISLSLKDVDQETGEDLNPSKTKTLVGGEIHNN
QVEARNPDRPSSMPLVEHVPDIDDASEKKRRYQRMSSPERFEIQQMIAANVIDKSELPDF
DEESGLIVREDDSDEDIEIELKEEEPPFLTGHGRVGVDLSPVKIVKNPDGSLSQAAMMQN
ALQKERRELKQAQREAEMNSVPSGVNKDWIDPMPEGGDRKFAAQVRGAGMPPADVPEWKK
HITGGQKASYGRKEKKSLLEQRQGLPIYKLKDELVKAVTDNQILIVIGETGSGKTTQITQ
YLAEAGYTTTGKIGCTQPRRVAAMSVAKRVSEEFGCRLGQEVGYTIRFEDCTSPETKIKY
MTDGMMLRECLIDGDLTQYSIIMLDEAHERTIHTDVLFGLLKTAVLKRKELKLIVTSATL
DAVKFSQYFFEAPIFTIPGRTYPVEVLYTKEAETDYLDASLITVMQIHLMEPPGDILLFL
TGQEEIDTACETLYERMKALGPEVPELIILPVYSALPSEMQTRIFEPTPPGSRKVVIATN
IAETSLTIDGIYYVVDPGFVKQKVYNSKTGMDQLIVTPISQAQAKQRAGRAGRTGPGKCY
RLYTERAYRDEMLPTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMQTLISAMEQ
LHALSALDDEGLLTRLGRRMAEFPLEPMLSKMLIMSVHLACSDEILTVVSMLSVQNVFYR
PKDKQDLADQKKAKFHQSEGDHITLLAVYNSWKNNKFSSPWCYENFVQIRTLKRAQDVRK
QMLGIMDRHKLDVVSCGKNTARVQKAICSGFFRNAAKKDPQEGYRTLVDSQVVYIHPSSA
LFNRQPDWVIYHELVLTTKEYMREVTAIDPKWLVEFAPKFFRFSDPTKLSKQKKQQKIEP
LYNKYEDPNSWRISRAFKKFHTKVTF
NT seq
3681 nt
NT seq
+upstream
nt +downstream
nt
atggatgagctgcaaaagctagaatatctctcacttgtttctaaagtctgtacagaactt
gaaaatcatttgggtctgaatgataaggatttggctgagtttattattcatcttgctgag
aagaatgatacgtttgagaaattcaagaaagccttggatgaaaatggtgcagaatttgcg
gattcccttgttgccaatttactcagactgatccaaaaaatgaaacccaaaccaaaagca
gaggtcaaactgaagaaagaagaagaaattgacaatgagacactgaaaagcgacatagaa
ataaaaaagaagctgttccctggactagccatagctgatgaccccaaaatcagggacatg
ttagcagatgaagatgaagaaaaaccaattaaaacagaaacctcccagccaatcaaaaca
gagagaatggatgaagatgggccaatcaaagcagagaaaggagacactgacattgctgtt
gatatgatgaatgaacttgaagctttgaagaatgcccctccaccccaagagaaaaatagg
gagaaagacagaagaagggacaggagtcgcagtagagaaaaagataggaggaggagaagg
agtagatctcgagataggtcaaggtcacggagtcgagatagagatcaagacagacgaaga
aataggtcaaggtcacgagacagagacgacagacgcagacgaagatcaagaagccgcagt
cgcgagaaggacaagaaaaaatggaggggaaaagatcgagaggaactgcctatggaccca
gacatcggaaggatttacaatggccgggtaaacacactcatgcagtttgggtgtttcgtt
cagttagaaggacttcgaaagaaatgggaaggtcttgttcacatatcgcagttgaggaga
gagggtagggtcaccaatgtcagtgatgtcgttcaaagaggtcaaaaggtcaaggtcaaa
gtgttgtccttcactggacagaaaattagtctgtcattgaaggatgtggatcaagaaact
ggggaggatctgaatccgtcgaagacaaagacgttggtgggcggagagattcacaacaat
caggtggaggccagaaatcctgaccgaccctcgtcaatgcccctagtagagcatgtgcca
gacatcgacgatgccagcgagaaaaagcggcgttatcaacgcatgtcctcgcccgagagg
ttcgaaattcaacagatgatcgccgcaaacgtcattgacaaatcggagctcccggacttt
gatgaggagtcgggactcattgtgagggaggacgattccgacgaggacattgaaatcgag
ctgaaggaggaagagccaccatttttgacaggtcacggtcgagtgggcgtggatctcagt
cctgtcaaaattgtaaagaatccagatggatctctgtctcaagcggccatgatgcaaaac
gccttacagaaggagcgacgagagctgaagcaggcccaaagagaggccgagatgaactca
gtgccctctggtgtcaacaaggactggattgatcccatgccggaaggaggagacagaaag
tttgcggcccaggtccggggtgctggcatgcccccagcggacgtcccagagtggaagaag
cacattacagggggtcagaaggcgtcctatggaaggaaggagaagaaatccctcctggag
cagagacagggtctccccatctacaaactcaaggatgaactggtcaaggctgtaacagac
aatcagattctgatagtcatcggcgagactggctcaggaaagacaactcagatcacccag
tatctggccgaggctggttacaccacgacaggaaaaatcggctgcactcagccgcgtcgt
gtcgccgccatgtccgtggcaaaaagagtgtcggaggagtttggatgtcgtctcggtcaa
gaggtcggttacacgattcgttttgaggactgtacgagcccggagacgaagataaagtac
atgacagacggtatgatgctgagggagtgtctgattgacggggaccttacgcagtacagc
atcatcatgttggacgaggcccacgaacgaaccattcacactgacgtcctgttcggactt
ctcaagacggctgttctgaagcgaaaggaattaaaactcattgttacatcagctactttg
gatgccgtcaaattctcacagtatttctttgaggcgccgatctttacgattcctggccgt
acctaccccgtcgaggttctgtacaccaaggaggcggagactgactacctggatgcctcg
ctgatcaccgtcatgcagatccatctgatggagccaccaggtgacattctgctattcctg
accggtcaagaggagattgacacggcctgtgagaccctgtatgagagaatgaaggccctg
gggcccgaggtccccgagctgatcatcctacctgtctacagtgccctgcccagcgagatg
cagaccaggatctttgagccaacaccccctgggtcaagaaaggttgtgatagccacaaac
attgcagagacctcgctgactatagatggaatttattatgtggtggatccaggatttgtc
aagcagaaggtgtacaactccaaaacaggcatggatcagctgattgtcacgcccatatcg
caggcacaggccaaacagagagctgggcgggcaggcagaacgggccccggaaaatgctac
cgtctctacactgagcgtgcttacagagacgagatgctgccgacaaacgttccggagatc
cagcgcacgaatctggccagcaccgtgctctcactgaaggccatggggatcaacgatttg
ttgtccttcgacttcatggatgccccgccgatgcagacgctgatctcggccatggagcag
ctgcacgcactcagtgccctagatgacgagggtcttctgactaggcttggaaggaggatg
gcagagtttccgttggagcccatgttgtccaagatgttgatcatgtctgtccatcttgcc
tgtagtgatgagatcctgaccgttgtctccatgttgtctgtccaaaatgtcttctacaga
cccaaggacaagcaagacttagcggaccagaagaaggccaagttccaccaatcggagggc
gatcacatcacgttgctggccgtgtacaactcgtggaagaacaacaagttctccagcccc
tggtgctacgaaaactttgtgcagatccgaactctcaaaagggcccaagatgtccgcaaa
cagatgttgggaattatggacagacacaagttggatgtagtcagctgtggtaaaaacact
gcccgagtccagaaggccatctgtagtgggtttttccgtaacgccgccaaaaaggacccc
caggaagggtatcggacactcgttgacagtcaagtggtctacatccacccctctagcgcc
ctcttcaaccgacagcccgattgggttatctaccatgagctcgttctgacaaccaaggaa
tacatgagagaagtcacggccattgacccaaagtggctggtcgagtttgccccaaaattt
ttccgcttcagcgaccccacgaaactcagcaagcaaaagaaacagcagaaaatcgagcct
ttatacaacaaatacgaggatccaaactcatggagaatctcgcgagctttcaagaaattt
cacacaaaagttaccttctga
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