Magallana gigas (Pacific oyster): 105328660
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Entry
105328660 CDS
T03920
Name
(RefSeq) lysine-specific demethylase 2A
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
crg
Magallana gigas (Pacific oyster)
Pathway
crg03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
105328660
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
crg03000
]
105328660
04121 Ubiquitin system [BR:
crg04121
]
105328660
03036 Chromosome and associated proteins [BR:
crg03036
]
105328660
Enzymes [BR:
crg01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
105328660
Transcription factors [BR:
crg03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
105328660
Ubiquitin system [BR:
crg04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
SCF complex
Target recognizing subunit (F-box)
105328660
Chromosome and associated proteins [BR:
crg03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
105328660
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
105328660
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
LRR_4
JmjC
F-box-like
JHD
Cupin_8
LRR_6
F-box
Rubredoxin
LRR_8
Motif
Other DBs
NCBI-GeneID:
105328660
NCBI-ProteinID:
XP_011427933
LinkDB
All DBs
Position
LG6:24359736..24371462
Genome browser
AA seq
1294 aa
AA seq
DB search
MTDSQERGRKLRVKERKTYTDVDLDDDDIDGKRSYTLDEKLRSNKYNRKYVNELTGTEFC
LKYIQENGLENPIVFVDKTGLGLRVPSENFKVSDVKQCVGSRRMLDVMDVNTQKGMEMSM
REWVQYYDNPDRQRLLNVISLEFSHTKLENYVESPTFVRQIDWVDTVWPRHLKECQTEST
NIIEKMKYPKVQKYCLMSVQGCYTDFHIDFGGTSVWYHILHGEKVFWLIPPTEKNIDIYT
NWVLSGKQGDIFLADHVEGCQKIELLQGYTFIIPSGWIHAVYTPKDSLVFGGNFLHSYNI
INQLRVSEVEDKTRVPQKFRYPFYTEIAWYVLARYISCITGKQCLELPPEDKENEDRREF
SPFLQDECSQDTDTSVHTHRSTTPKLSKSVTIELTRIDQSPSIHRSVSEEEAVTPQRVRS
PRKLSSDSCSSADTEIYDKSEDILGSLTSGESQEKKMDTAQTGGKKPKSSDSTYKMAHSP
SVRGNRKEHKVCYLTKCELRGLEKLIQWIEEHPTAKKGYPKDILDPETLLNDAKQMLEDH
ASDDQSLACNGEALLVWPASKKPPKPKVYKTGQGHLKLTKSQQAKSNSTSCIRRRRTRCK
KCEPCTRTDCGECNFCKDMKKYGGPGRMKQSCKSRQCLAPVIPNAAICMICGKDERVKSS
ENPDEMITTLMECCICWEINHPECVRKKHESLENEGTINEDLPNSWECPKCCQDGKQGLL
KARFSRIKKEESLYSPRAGSPASSYDSTTEIKSESEAEGKRVVMKQEREYSDFEVNDDSL
TETESSSVDARIGSTTTQSPEQTVSHTPSPKDPPTFKQTLQKKFSPKSFGVRRKPGRPIG
SSNQLKKKSAWNISPNKSSKVKETVITRSGRKVKRSPQLLGDDMELDFPKKRPKREGFVS
RPDDPGDMEVKVVKSQGLLSSTASNNEATESYYSSEEVTNFEFVQTKVKKVSEDKQTVRE
NPLPKKTYKVRQSYGAGRRGRKAEKVSSGTRPSQMKSCDSGQGKVTEVVQRKYVVRPPAP
SPPPDCVELNNGAFHLLEKVHWTKVFSFLPHADLARCLSVCKAFYSWGMNCELWPVIDLS
RKRICQTHIIGMVKRQPDSLKLDNVIMTQQQLTWLLARIPQLKTLSLSSCSWSTVSALCF
SCCPLLTTLNLNWMLGLSHQHFRDLVTPPTDLRPGMNDVSRFHNLRTLRLAGTEIEDESL
QLIPQHLTQLRDLDISYCPRVTNEGIKKLVEANNAVITKSLRVLDISGSRSLTNQTLDSL
VKCVNLSVVKIHKCSNITAISVQRFPNKAVKFLK
NT seq
3885 nt
NT seq
+upstream
nt +downstream
nt
atgaccgattcacaagagagaggacgcaaattgagagtgaaagagaggaagacgtacaca
gatgtggacttggatgatgatgatattgacggcaagagaagttacactctggatgagaaa
ctcagatccaacaagtacaacagaaaatatgtcaatgagctgacggggaccgagttttgt
cttaaatacatccaagaaaatgggcttgaaaatccaattgtctttgttgataagacagga
cttggactcagggttccaagtgaaaactttaaagtttcagatgttaaacagtgtgtaggg
agtaggcggatgctggatgtgatggatgtcaatactcagaaaggaatggaaatgtccatg
cgggagtgggtgcagtactacgataatccagaccgccagaggctgctcaatgtcatcagt
ctggagttcagtcacaccaagctggagaactatgtggagtcacctacttttgtgagacag
atagactgggtagacacagtatggccaaggcatctgaaggaatgtcagactgagtccacc
aatatcatcgagaaaatgaagtatcccaaagttcaaaagtattgtttgatgagcgtgcag
ggatgttacacagatttccacattgattttggtggcacctcggtgtggtaccacattttg
cacggagagaaagtgttctggctgattccaccaacagagaagaacatagacatatacacc
aactgggtgctctcaggaaaacagggcgacattttcctggcagaccacgtggaaggctgc
cagaagattgaactcctgcagggatatacctttattattccctcgggctggattcatgcc
gtctacacacctaaagactccctggtgtttggtgggaactttttgcacagttacaacatc
ataaatcaactgagagtgtcggaagttgaggacaaaactcgtgtgccacagaagttccgt
tatccattttacacagagattgcgtggtacgtattagcgaggtacatcagctgtataaca
gggaaacagtgtctggaactccctcccgaggacaaggaaaacgaggaccggagagagttc
tctccctttcttcaggacgagtgttcccaggacacagacaccagtgtccacacccacaga
tccaccacccccaaactctccaaaagtgtcaccatagaactgacccggatagaccagtcc
ccttccatacaccggtcagtcagtgaggaggaagcggtcacacctcagcgagtcagatcc
cctcgcaagttatcatccgacagctgtagttctgcggacacagaaatatacgacaaatct
gaagatattctaggatctcttaccagtggtgaatcgcaagagaaaaaaatggacactgct
caaactgggggcaagaaacccaagtctagtgattcgacatacaagatggcacacagccct
tccgttcgggggaacaggaaggaacacaaagtgtgttatttgacaaagtgtgaattacgt
ggacttgaaaagttaattcagtggatagaggagcaccctactgccaaaaaaggatatcct
aaagatatattagatccagaaacactgctaaacgatgcaaagcaaatgctagaagaccat
gcctcagatgatcaaagtcttgcatgcaatggagaagctcttcttgtttggcctgcatcc
aaaaagcctcccaagccaaaagtgtacaagacaggccaaggacatctgaagttgacgaaa
tcccagcaggccaagagtaattctacctcatgtatcaggcgacggcgaacgcggtgtaaa
aagtgcgagccgtgcaccagaacggattgtggagagtgtaacttttgtaaagacatgaag
aaatacggaggaccaggacgtatgaagcagtcttgcaagagcagacagtgtttagcacct
gtgattcctaatgctgcaatctgtatgatttgtgggaaggacgaacgggtgaaatcctcg
gaaaatccggacgagatgatcaccaccctgatggagtgctgtatctgctgggagatcaat
catccggagtgtgtccggaaaaaacatgaaagcctggagaatgagggaacgatcaatgag
gacctgccaaacagctgggagtgtccgaagtgttgccaggacggaaaacagggtctgcta
aaggccaggttttcaaggatcaagaaggaagagagtctctacagcccccgagcaggaagt
ccagcatcatcatacgattctacgacagagatcaaatcagaatcagaggcagagggaaaa
cgggtcgtcatgaaacaggaaagggaatattctgactttgaagtcaatgacgattcctta
actgaaacagaaagcagctcagtggatgccagaatcggatcgacaaccacccagtcacct
gaacagactgtatcacatacaccctcccccaaagacccgcccaccttcaaacagaccctc
caaaagaaattctctcccaaatcttttggggtccggagaaaacctggccgaccaatcggc
tcatcaaatcagctgaaaaagaaatcagcctggaacatttcacccaacaaaagctcaaag
gtaaaagagaccgttataaccaggtctggccgcaaagtgaagagatctccacagttattg
ggagacgacatggaattagacttccccaagaaacgaccaaagcgtgagggctttgtatcc
agaccggatgatccaggtgatatggaggtcaaggtcgtgaaaagtcaaggtcttctgtca
tccaccgcctctaataacgaggccactgaaagctactattcctcagaggaagtcactaac
tttgaatttgttcagacaaaagtgaaaaaggttagtgaagataaacagacagtcagagag
aatcctcttccaaagaaaacatacaaagtgaggcaaagttatggagcaggaaggagagga
aggaaggccgagaaagtaagcagtgggaccagaccatctcagatgaaatcttgtgacagc
gggcagggtaaagtgacggaggtggtgcagaggaagtatgtggtgcgacccccagccccg
tcaccacctccagactgtgtggaacttaacaatggtgccttccatctgttggagaaagtc
cactggactaaagtgttttctttcttgcctcatgcggacctggcaagatgtctgtctgtc
tgcaaggctttctacagctggggaatgaactgtgagctgtggcctgtcattgatttaagc
cgaaaaagaatatgccaaacacacatcataggcatggtgaaaagacagccggacagcctc
aagttagacaatgtgataatgacccaacaacagctaacctggttactggcccgcatcccc
cagctcaaaaccctgtccctgtcctcttgttcctggtccacggtcagtgccctctgtttc
tcctgttgcccccttctgaccaccctcaatctgaactggatgctgggactgagccaccaa
cacttcagggaccttgtgacccctcccactgatttacgtccgggtatgaacgatgtaagt
cggttccacaacctgcgcaccttgcggttggctggaaccgaaatcgaggatgaatcattg
cagcttattccacaacatctgacccagttaagagaccttgacattagttattgtcctagg
gtgaccaacgaaggaattaaaaagcttgtggaggccaataatgcagtgattaccaagtct
ctgcgagtgttggacatttcggggtcacgctcactaactaaccaaaccctcgacagtttg
gtcaaatgtgtcaacctgtctgtggtcaaaatacacaaatgttccaatatcacagccata
tcagtgcaaaggtttcccaacaaggctgtgaaatttttgaaatga
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