Magallana gigas (Pacific oyster): 105331061
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Entry
105331061 CDS
T03920
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
crg
Magallana gigas (Pacific oyster)
Pathway
crg03013
Nucleocytoplasmic transport
crg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
105331061
03015 mRNA surveillance pathway
105331061
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crg03019
]
105331061
Enzymes [BR:
crg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
105331061
5.6.2.5 RNA 5'-3' helicase
105331061
Messenger RNA biogenesis [BR:
crg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
105331061
mRNA cycle factors
Common to processing body (P body) and stress granule
105331061
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
DEAD
SLFN-g3_helicase
UvrD-helicase
Helicase_RecD
Viral_helicase1
nSTAND3
AAA_16
ATPase
AAA_22
SRP54
PhoH
AAA_10
Motif
Other DBs
NCBI-GeneID:
105331061
NCBI-ProteinID:
XP_011431401
UniProt:
K1PBZ4
LinkDB
All DBs
Position
LG3:complement(39927938..39936980)
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AA seq
1108 aa
AA seq
DB search
MSVDAYAPNSQSLTFLEPEEDLIGADTQGTDYDYTDFTLPSQTQSQTQASQLEHGQSQSQ
VNGPEAPIQNGLDKGVVGIAQGVGELTFEEEEEEQFMMKDLPKHACSYCGIHDPASVVYC
NSTKKWFCNGRGNTSGSHIINHLVRAKAKEVTLHKDGPLGETVLECYNCGCRNVFLLGFI
PAKADSVVVLLCRQPCATLTNLKDMNWDPSQWQPLIQDRQFLSWLVKVPSDQEQMRSRQI
SAQQINKLEELWKDNPDATLEDLEKPGVDEEPTQVLLRYDDAYQYQNIFGPLVKLEADYD
KKLKESQTQDNIVVRWDVGLNKKRIAFFHLPKANDEMKLMHGDELRLRYQGELHKPWSGV
GHVIKIPDNHSDEVAIELKSNAGVPSECTHNFVVDFVWKSTSFDRMQAALKTFAVDETSV
WGYIYHKLLGHEVEDVVIKCQLPKRFSVPNLPELNHSQVYAVKTVLQRPLSLIQGPPGTG
KTVTSATIVYHLVKQNNGQVLVCAPSNIAVDQLTEKIHKTGLKVVRLCAKSREAIDSPVS
FLALHNQIRNMESVPELQKLQQLKDETGELSSTDEKRYRSLKKQCEKELLQHADVICCTC
VGTGDPRLAKMQFRSVLIDESTQATEPECMIPVVLGCRQLILVGDHCQLGPVVMCKKAAR
AGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVAPGDRVRKGLDI
PWPQGDKPMFFYTTSGQEEISSSGTSYLNRTEAANVEKIATRFLRSNVKPEQIGIITPYE
GQRAYIVQYMQYSGSLNKKLYQEIEVASVDAFQGREKDFIILSCVRSNEHQGIGFLNDPR
RLNVALTRAKYGIIIVGNPKVLSKQPLWNHLLTYYKEQKCLVEGPLNNLKESMIQFSKPR
KLVNTSNPGGRFMSNIMFDAREVLIPGSVYDRSRGYNEPVVRTHDQLSYIGPERQYTGPA
LNIPVPVNMFMPPMPQPFNGQPMPMGNRNAPAQRGTGRRRGQKPPRYSNTQSQQNSSQYS
QGNSQSQASQDVSQPFSQGPLTQGPMSMSQPFQMSQPGLSGLSQPELSQDSFLADDFKSQ
ADGMLSQDSTYQGDRMFYASQLSQGPFN
NT seq
3327 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggacgcatatgccccaaattcccaatctttgactttcctcgaacctgaagag
gacctcattggggccgacactcaaggaaccgattatgactacacagatttcaccctacca
tcccagacccagtcacagacccaggcatcccaacttgaacacggtcaaagccaaagccag
gtgaatggtccagaagcccctatccagaatgggctggacaaaggtgttgtgggcattgcc
cagggggttggggagcttacttttgaagaggaggaagaagagcagtttatgatgaaagat
ctaccgaagcatgcctgctcatattgtggaattcatgacccagcatctgtggtgtattgc
aatagcaccaagaaatggttctgcaatggaagaggaaacacttctggaagtcatatcatc
aaccatcttgtacgagccaaggcaaaggaagtgaccctgcacaaagatggccccctggga
gagactgttttggagtgctataactgtggctgtagaaatgtgttcttgcttggattcatc
cctgccaaggcggactcagtggttgtgctcctatgtcgccagccctgcgcaactcttacc
aacttgaaggatatgaactgggacccaagtcagtggcagccattgatacaggaccgtcag
tttttgtcatggctggtcaaagtgccctctgatcaggagcagatgaggagccgccagatc
tcagcccagcagatcaataaactagaggagctgtggaaagacaaccctgatgccacgctg
gaggatctagaaaagccaggggtggatgaggagcccacacaggtgttgctcagatatgac
gatgcttaccagtaccagaacatttttggacctctggtaaagttggaggcagattatgac
aagaagttgaaggaatcccaaacccaggacaacatcgtagtgcgttgggatgttggactc
aataaaaaacggatagctttcttccacctcccaaaagcaaatgatgagatgaagttaatg
catggggatgagttgaggcttcgttatcaaggcgagctgcacaaaccatggtctggtgtt
ggacatgttattaagattccagacaaccatagcgatgaagtggccattgaactcaaaagt
aatgcaggagtgcccagcgagtgcactcataactttgtggtggattttgtttggaagtca
acatcatttgacaggatgcaggcagccttgaagaccttcgctgtggatgaaacatctgta
tggggatacatctaccacaaacttctgggacacgaggtggaggatgttgtcatcaagtgt
cagctccccaagagattcagtgtccctaacctcccggagctgaaccactcccaggtgtac
gctgtcaagacggtcctccagcggccactcagtctcattcagggtcctcctggaactggt
aagactgtgacatctgccaccattgtgtaccacttggtcaaacagaacaacggacaggtg
ttggtctgtgctccctctaacattgctgtggaccaacttactgagaagattcacaaaaca
ggactgaaggttgtacgtctgtgtgcaaagagcagagaagccattgattcaccagtgtct
ttcttggctcttcacaatcagattagaaacatggaaagtgtgccagagttacagaaactg
cagcagctgaaggatgagacaggtgagctgtcgtccactgatgagaaacgatacaggtct
ctgaagaagcagtgtgagaaagaattgttgcagcatgcagacgttatctgttgtacgtgt
gtgggaactggtgatcctaggttggccaagatgcagtttaggtctgtcctgattgatgag
agcacacaggccactgaaccagagtgtatgatccccgtggtgctgggctgtagacagttg
atcctggtaggagaccactgtcagcttggccccgtggtgatgtgtaagaaggcagcccga
gcgggtctgtcccagtcactctttgagcgcctggtagtgctggggatcagacccatacgt
ctacaggtccagtacagaatgcaccctgctctgagtgctttcccatccaatatcttctac
gaaggatctctacaaaatggagttgcaccaggagaccgcgtaaggaaaggacttgacatt
ccctggcctcaaggagacaaacccatgttcttctatacaacatctggacaagaggaaata
tcaagttctggaacttcttatttgaataggactgaagcagctaacgtggagaagattgcc
acaagatttttgcgatccaacgtcaagcctgagcagataggtatcatcactccttatgag
ggccagagagcctacattgtacagtacatgcagtacagtggatctctgaacaagaaactg
tatcaggagatagaagttgctagtgttgatgcttttcaagggagagagaaagatttcatc
attctctcttgtgttcgttctaatgaacatcaaggaatcggttttctgaatgaccctaga
cgtctaaatgtggctttaactcgagcaaaatatggaataattattgttggaaatcccaaa
gttttatcaaagcaacctctttggaaccaccttttaacttactacaaggagcagaagtgt
ctggtggagggccctctgaataatctgaaggagagcatgattcagttcagcaagccccgc
aaacttgtcaacacgtccaacccgggaggacggtttatgagcaacataatgtttgatgcc
agagaagttctgattccgggaagtgtgtatgacagaagtcgcggatacaacgagccagtg
gttcgcacccatgaccagctgagttacattggtccagagagacagtacacaggccctgcc
ctgaacatcccagtgcctgtcaatatgttcatgccccccatgccacagccattcaatgga
cagccaatgccaatgggtaacagaaatgcccctgcccaaaggggtacgggacgtcgtcgt
ggacagaagcctccgcgctacagcaacacccagtcacagcagaacagttcccagtacagt
cagggcaacagtcagagccaggcaagtcaggatgtatcccagccattctcccagggacca
ctgacccaggggcctatgtctatgagccagcccttccagatgagtcagccaggcttgtct
ggtctctcccagccagagctctctcaggacagtttcttggcggatgacttcaaatctcaa
gcagatggcatgctgtcccaggactccacctaccagggagaccgcatgttttatgcatca
cagttgtcacagggtccatttaattag
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integrated database retrieval system
